Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D05
(962 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.045
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 33 0.045
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.18
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 0.22
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.24
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.32
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.42
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.3
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.5 bits (73), Expect = 0.045
Identities = 28/84 (33%), Positives = 28/84 (33%)
Frame = -1
Query: 866 GXGGXPRLXFLGXGGXGGFXVXAGXGXGVXXRGGVXGXXAXXXXXXXXXXXXSHXPXGGG 687
G GG P G GG GGF G G GG G P G G
Sbjct: 196 GSGGPPP----GPGGFGGFGGFGGEG---HHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248
Query: 686 RXXGXXGGGXGXVFXGGGPRXXXG 615
G GGG G GGGP G
Sbjct: 249 GGLGGFGGGPGG--FGGGPGGHGG 270
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 381 GXPGGXGGGPXXEKGXG 431
G PGG GGGP G G
Sbjct: 256 GGPGGFGGGPGGHGGPG 272
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 33.5 bits (73), Expect = 0.045
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +1
Query: 748 AXXPXTPPRXXTPXPXPAKTXKPPXPPXPKKXXRGXPPXP 867
A P P TP P PA PP PP PP P
Sbjct: 722 AIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAP 761
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.5 bits (68), Expect = 0.18
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 834 GXXGGXG-FXXFXGGXXRGXXPGGGXRXXXGGGXXGGV*GGVXXRPXGG 691
G GG G GG RG GGG R GGG GG GG GG
Sbjct: 142 GFRGGRGGSRGGFGGNSRGGF-GGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -1
Query: 692 GGRXXGXXGGGXGXVFXGGGPRXXXGGXRLGXXXG 588
GG G GGG F GG GG R G G
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect(2) = 0.22
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 460 PPXPPXXPXXPXPFSXXGPPPXPP 389
PP PP P P G PP PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -2
Query: 463 PPPXPPXXPXXPXPFSXXGPPPXPPGXP 380
P P P P P P P P P G P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAP 1140
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -2
Query: 463 PPPXPPXXPXXPXPFSXXGPPPXPPGXP 380
P P P P P P P P P G P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 21.4 bits (43), Expect(2) = 0.22
Identities = 9/27 (33%), Positives = 9/27 (33%)
Frame = -2
Query: 277 GSXPXXXXXXXPPXPVXXPXXPPXPPP 197
G P PP P PP P P
Sbjct: 1206 GVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 31.1 bits (67), Expect = 0.24
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Frame = +1
Query: 757 PXTPPRXXTPXPXPAKTXKPPXP--PXPKKXXRGXPPXPGXGXP 882
P PP P P +PP P P P++ G PP P P
Sbjct: 104 PREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 766 PPRXXTPXPXPAKTXKPPXPPXPKKXXRGXPPXP 867
P P P P PP PP P G PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = -2
Query: 463 PPPXP----PXXPXXPXPFSXXGPPPXPPGXP 380
PPP P P P P + GPPP PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.3
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 463 PPPXPPXXPXXPXPFSXXGPPPXPPGXPG 377
P P P P P GPPP PP PG
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP-PPG 769
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 757 PXTPPRXXTPXPXPAKTXKPPXPPXPKKXXRGXPPXP 867
P PP P P PA PP P G PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPI----MGGPPPPP 765
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 466 SPPPXPPXXPXXPXPFSXXGPPPXPPGXPG 377
+P P PP P P PPP PPG G
Sbjct: 747 APIPVPPPAPIMGGP----PPPPPPPGVAG 772
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 244 PPXPVXXPXXPPXPPPPG 191
PP P+ PP PPPPG
Sbjct: 753 PPAPIMG-GPPPPPPPPG 769
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.42
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -2
Query: 475 GGXSPPPXPPXXPXXPX-PFSXXGPPPXPPGXP 380
G + PP PP P P P PP PP P
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 29.1 bits (62), Expect = 0.98
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +1
Query: 757 PXTPPRXXTPXPXPAKTXK-PPXPPXPKKXXRGXPP 861
P PP A K PP PP P + RG PP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -2
Query: 466 SPPPXPPXXPXXPXPFSXXGPPPXPPGXP 380
+PP PP P P PP PP P
Sbjct: 427 APPSLPPSAPPS-LPMGAPAAPPLPPSAP 454
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = -2
Query: 463 PPPXPPXXPXXPXPFSXXGPPPXPPGXP 380
PP PP P P G P PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = -2
Query: 274 SXPXXXXXXXPPXP-VXXPXXPPXPPPPG 191
S P PP P P PP PPPPG
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 466 SPPPXPPXXPXXPXPFSXXGPPPXPPGXPG 377
S PP P P P F PP PP PG
Sbjct: 3 SLPPGNPPPPPPPPGFEPPSQPPPPP-PPG 31
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 764 PPPGXXPRXXPPXKXQNPXPPXXPKXKXGXXP 859
PPP P PP + P PP K + P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 264 PXXGXSPPPXQXXXPPGPRXXPPPGXPXXP 175
P S PP PP P PPP P P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +1
Query: 766 PPRXXTPXPXPAKTXKPPXPPXPKKXXRGXPPXPGXGXPXK 888
PPR P P PA PP P PP P K
Sbjct: 144 PPRPSIPPPSPASA--PPIPSKAPPIPSSLPPPAQPAAPVK 182
Score = 25.8 bits (54), Expect = 9.1
Identities = 22/94 (23%), Positives = 23/94 (24%)
Frame = -2
Query: 475 GGXSPPPXPPXXPXXPXPFSXXGPPPXPPGXPGXXXXXXXSGRGXXXXXXXXXXXXXXXX 296
G S PP P P P S PP P P S
Sbjct: 116 GKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASA-----PPIPSKAPPIPSS 170
Query: 295 XXFSVWGSXPXXXXXXXPPXPVXXPXXPPXPPPP 194
+ P P P P PP PPP
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.3
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -3
Query: 264 PXXGXSPPPXQXXXPPGPRXXPPPGXP 184
P PPP P GP PPP P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -2
Query: 466 SPPPXPPXXPXXP-XPFSXXGPPPXPP 389
+PPP P P P P GPP PP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 766 PPRXXTPXPXPAKTXKPPXPPXPKKXXRGXPPXPGXGXP 882
PP+ P P P PP PP G P P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPP-PPSAPPMPAGPPSAPPPPLP 1736
Score = 25.8 bits (54), Expect = 9.1
Identities = 14/44 (31%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Frame = +1
Query: 748 AXXPXTPPRXXTPXPX-PAKTXKPPXPPXPKKXXRGXPPXPGXG 876
A P PP P P P PP P P P P G
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,010
Number of Sequences: 5004
Number of extensions: 17564
Number of successful extensions: 278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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