Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D05
         (962 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.047

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.047
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 264 PXXGXSPPPXQXXXPPGPRXXPPPGXP 184
           P    SP   Q   PP P   PPPG P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 26.6 bits (56), Expect = 0.33
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
 Frame = -2

Query: 475 GGXSPPPXPPXXPXXP----XPFSXXGPPP-XPPGXP 380
           G   P P P   P  P     P    GPPP  PPG P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.4 bits (53), Expect = 0.77
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 264 PXXGXSPPPXQXXXPPGPRXXPPPGXP 184
           P  G  P P Q   P GP   PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +1

Query: 784 PXPXPAKTXKPPXPPXPKKXXRGXPPXPGXGXP 882
           P P P ++ + P    P    +G PP    G P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -2

Query: 475 GGXSPPPXPPXXPXXPXPFSXXGPPPXPPGXPG 377
           GG  PP      P  P   +  G PP  P  PG
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPL-PNMPG 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,119
Number of Sequences: 438
Number of extensions: 4437
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)