Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D04
         (908 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q02446 Cluster: Transcription factor Sp4; n=23; Tetrapo...    38   0.47 
UniRef50_UPI0000583F3B Cluster: PREDICTED: hypothetical protein;...    37   0.82 
UniRef50_A7SXN0 Cluster: Predicted protein; n=1; Nematostella ve...    37   0.82 
UniRef50_Q9VJS8 Cluster: Zinc finger protein Elbow; n=5; Sophoph...    34   4.4  
UniRef50_A7DBU7 Cluster: Conserved hypothetical membrane spannin...    34   5.8  
UniRef50_Q02447 Cluster: Transcription factor Sp3; n=44; Eumetaz...    34   5.8  
UniRef50_A6N828 Cluster: Sp3; n=9; Clupeocephala|Rep: Sp3 - Dani...    33   7.6  

>UniRef50_Q02446 Cluster: Transcription factor Sp4; n=23;
           Tetrapoda|Rep: Transcription factor Sp4 - Homo sapiens
           (Human)
          Length = 784

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 143 MSPEPTKVQVEYINEEKPIKEGS--GSQSPLALLAATCSRLGAANMGPEQQQSDKEQQHH 316
           M+ E  K      N +KP   GS     SPLALLAATCS++G     P + Q+  +QQ  
Sbjct: 18  MATEGGKTSEPENNNKKPKTSGSQDSQPSPLALLAATCSKIGT----PGENQATGQQQII 73

Query: 317 FSP 325
             P
Sbjct: 74  IDP 76


>UniRef50_UPI0000583F3B Cluster: PREDICTED: hypothetical protein;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 283

 Score = 36.7 bits (81), Expect = 0.82
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = +2

Query: 212 GSQSPLALLAATCSRLGAANMGPEQQQSDKEQQHHFSP 325
           G  SPLALLAATC R+GA +  P   QS + +    SP
Sbjct: 21  GKPSPLALLAATCQRIGAGS--PSSSQSPRHRPRTPSP 56


>UniRef50_A7SXN0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 428

 Score = 36.7 bits (81), Expect = 0.82
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +2

Query: 140 IMSPEPTKVQVEYINEEKPIKEGSGSQSPLALLAATCSRLG 262
           +++    K   EYI +  P+KE    +SPLALLAATCS +G
Sbjct: 28  MLTQSVAKCGQEYI-QPLPLKEEEQKKSPLALLAATCSSIG 67


>UniRef50_Q9VJS8 Cluster: Zinc finger protein Elbow; n=5;
           Sophophora|Rep: Zinc finger protein Elbow - Drosophila
           melanogaster (Fruit fly)
          Length = 678

 Score = 34.3 bits (75), Expect = 4.4
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
 Frame = +2

Query: 221 SPLALLAATCSRLGAANMGPEQ-----QQSDKEQQHH 316
           SPLALLA TCS +GA    P+      ++S K+ QHH
Sbjct: 135 SPLALLAQTCSAIGADTTNPKLLAANIEKSTKQLQHH 171


>UniRef50_A7DBU7 Cluster: Conserved hypothetical membrane spanning
           protein; n=5; Methylobacterium extorquens PA1|Rep:
           Conserved hypothetical membrane spanning protein -
           Methylobacterium extorquens PA1
          Length = 324

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +2

Query: 146 SPEPTKVQVEYINEEKPIKEGSGSQSPLALLAATCSRLGAANMGPEQQQSDKEQQ 310
           +P  +K+   + + E  ++ G+G Q P AL  A  S + AA  G + QQ+   ++
Sbjct: 177 APSLSKISDPFSSIENQLRSGAGGQDPAALKDAAVSAMRAAVTGDDAQQAQASEK 231


>UniRef50_Q02447 Cluster: Transcription factor Sp3; n=44;
           Eumetazoa|Rep: Transcription factor Sp3 - Homo sapiens
           (Human)
          Length = 781

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = +2

Query: 221 SPLALLAATCSRLGAANMGPEQQQS 295
           SPLALLAATCS++G  + G +++++
Sbjct: 57  SPLALLAATCSKIGPPSPGDDEEEA 81


>UniRef50_A6N828 Cluster: Sp3; n=9; Clupeocephala|Rep: Sp3 - Danio
           rerio (Zebrafish) (Brachydanio rerio)
          Length = 689

 Score = 33.5 bits (73), Expect = 7.6
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +2

Query: 203 EGSGSQSPLALLAATCSRLGAANMGPEQQQS 295
           E  G  SPLALLAATC+ LG+   G E   S
Sbjct: 24  EQDGQPSPLALLAATCTGLGSPAPGAENGAS 54


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,038,576
Number of Sequences: 1657284
Number of extensions: 8530094
Number of successful extensions: 22381
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22341
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)