Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D04
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    29   3.5  
U10438-3|AAA19082.2|  242|Caenorhabditis elegans Drosophila odd-...    29   6.1  

>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical protein
            F46F11.9b protein.
          Length = 1282

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +3

Query: 651  RRLL*MPRTVFRMAFKFSSHRLFLCSSCSRHWAAAWCRTXVLHIRTHRNNSCKYIRNCCS 830
            RRL+ +   +  +  K  S  L  C + S+   AA  R  +L IRT RN +   I+N CS
Sbjct: 973  RRLIALTAEILDLDTKSFSIHLKNCVAVSQ---AALSRVEILRIRTDRNEASTGIKNDCS 1029


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical protein
            F46F11.9a protein.
          Length = 1280

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +3

Query: 651  RRLL*MPRTVFRMAFKFSSHRLFLCSSCSRHWAAAWCRTXVLHIRTHRNNSCKYIRNCCS 830
            RRL+ +   +  +  K  S  L  C + S+   AA  R  +L IRT RN +   I+N CS
Sbjct: 971  RRLIALTAEILDLDTKSFSIHLKNCVAVSQ---AALSRVEILRIRTDRNEASTGIKNDCS 1027


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 173 EYINEEKPIKEGSGSQSPLALLAATCSRLG 262
           +YI +  P+    G +SPLALLA TC  +G
Sbjct: 8   QYITDFTPVPAEPG-KSPLALLAKTCETIG 36


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 173 EYINEEKPIKEGSGSQSPLALLAATCSRLG 262
           +YI +  P+    G +SPLALLA TC  +G
Sbjct: 8   QYITDFTPVPAEPG-KSPLALLAKTCETIG 36


>U10438-3|AAA19082.2|  242|Caenorhabditis elegans Drosophila
           odd-skipped-like protein1 protein.
          Length = 242

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 717 FLCSSCSRHWAAAWCRTXVLHIRTHRNNSCKYIRNC 824
           F+C  C+RH+  ++    ++H RTH N    +   C
Sbjct: 128 FICKYCARHFTKSY--NLMIHERTHTNERPFHCETC 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,626,943
Number of Sequences: 27780
Number of extensions: 202540
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)