Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D03
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    93   4e-20
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   3.6  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 93.5 bits (222), Expect = 4e-20
 Identities = 38/68 (55%), Positives = 54/68 (79%)
 Frame = +3

Query: 564 MGSVNVNRNVSDAFYRYKMPRICAKVEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGL 743
           M ++N+ R+V D+FYRY+MP++ +K+EGKGNGIKTVI NM ++AKALGRP  Y TK+FG 
Sbjct: 1   MATINIRRDVKDSFYRYRMPKLQSKIEGKGNGIKTVIPNMSDIAKALGRPPLYVTKFFGF 60

Query: 744 *IGCPXSV 767
            +G   ++
Sbjct: 61  ELGAQTTI 68



 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 24/44 (54%), Positives = 27/44 (61%)
 Frame = +1

Query: 706 GDPPRTQQSTLGCELGAXTQFDFKNDRFIVNGSHDSSKLQDLLD 837
           G PP       G ELGA T      DR+IVNG+HD+ KLQDLLD
Sbjct: 48  GRPPLYVTKFFGFELGAQTTIIADMDRYIVNGAHDAGKLQDLLD 91


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 10/35 (28%)
 Frame = +3

Query: 651 GNGIKTVIVNMPEVAKA----------LGRPATYP 725
           GN +KT IV MP V K+          LG PA YP
Sbjct: 18  GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYP 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,942
Number of Sequences: 5004
Number of extensions: 75641
Number of successful extensions: 216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)