Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D03
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-14|AAL16313.1|  402|Caenorhabditis elegans Hypothetical p...    97   1e-20
U64857-13|AAC25859.2|  436|Caenorhabditis elegans Hypothetical p...    97   1e-20
U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical p...    97   1e-20
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen prot...    33   0.36 
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    32   0.48 
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     32   0.48 
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     32   0.48 
AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen prot...    32   0.63 
Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical...    30   2.5  
X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    29   5.9  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    29   5.9  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    29   5.9  
Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical p...    28   7.8  
U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U64857-14|AAL16313.1|  402|Caenorhabditis elegans Hypothetical
           protein C37C3.2b protein.
          Length = 402

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 44/61 (72%), Positives = 51/61 (83%)
 Frame = +3

Query: 570 SVNVNRNVSDAFYRYKMPRICAKVEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGL*I 749
           ++NVNR V+D FYRYKMP++ AKVEGKGNGIKTVI NM E+AKAL RP  YPTKYFG  +
Sbjct: 2   ALNVNRAVADPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCEL 61

Query: 750 G 752
           G
Sbjct: 62  G 62



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +1

Query: 712 PPRTQQSTLGCELGAXTQFDFKNDRFIVNGSHDSSKLQDLLDG 840
           PP       GCELGA T FD KN+R+IVNG HD++KLQD+LDG
Sbjct: 49  PPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDG 91


>U64857-13|AAC25859.2|  436|Caenorhabditis elegans Hypothetical
           protein C37C3.2a protein.
          Length = 436

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 44/61 (72%), Positives = 51/61 (83%)
 Frame = +3

Query: 570 SVNVNRNVSDAFYRYKMPRICAKVEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGL*I 749
           ++NVNR V+D FYRYKMP++ AKVEGKGNGIKTVI NM E+AKAL RP  YPTKYFG  +
Sbjct: 2   ALNVNRAVADPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCEL 61

Query: 750 G 752
           G
Sbjct: 62  G 62



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +1

Query: 712 PPRTQQSTLGCELGAXTQFDFKNDRFIVNGSHDSSKLQDLLDG 840
           PP       GCELGA T FD KN+R+IVNG HD++KLQD+LDG
Sbjct: 49  PPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDG 91


>U64857-12|AAN84849.1|  413|Caenorhabditis elegans Hypothetical
           protein C37C3.2c protein.
          Length = 413

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 44/61 (72%), Positives = 51/61 (83%)
 Frame = +3

Query: 570 SVNVNRNVSDAFYRYKMPRICAKVEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGL*I 749
           ++NVNR V+D FYRYKMP++ AKVEGKGNGIKTVI NM E+AKAL RP  YPTKYFG  +
Sbjct: 2   ALNVNRAVADPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCEL 61

Query: 750 G 752
           G
Sbjct: 62  G 62



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +1

Query: 712 PPRTQQSTLGCELGAXTQFDFKNDRFIVNGSHDSSKLQDLLDG 840
           PP       GCELGA T FD KN+R+IVNG HD++KLQD+LDG
Sbjct: 49  PPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDANKLQDILDG 91


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  +  +A L++I A+P+LY++ +  +  SS++ E   C HR NG
Sbjct: 23  GIAVSTIATLTAIVAVPMLYNYMQHVQ--SSLQSEVEFCAHRSNG 65


>Z78064-1|CAB01509.1|  313|Caenorhabditis elegans Hypothetical
           protein F57B1.3 protein.
          Length = 313

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  +  +A L++I A+P+LY++ +  +  SS++ E   C HR NG
Sbjct: 23  GIAVSTIATLTAIVAVPMLYNYMQHVQ--SSLQSEVEFCAHRSNG 65


>AF040642-7|AAB94952.1|  329|Caenorhabditis elegans Collagen protein
           68 protein.
          Length = 329

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  I  VA L++I A+P+LY++ +  +  S+++ E   C HR NG
Sbjct: 27  GIAISTVATLTAIMAVPMLYNYMQHVQ--SALQSEVDFCRHRTNG 69


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  +  +A L++I A+P+LY++ +  +  SS++ E   C HR NG
Sbjct: 22  GIAVSTIATLTAIIAVPMLYNYMQHVQ--SSLQSEVEFCQHRSNG 64


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  +  +A L++I A+P+LY++ +  +  SS++ E   C HR NG
Sbjct: 22  GIAVSTIATLTAIIAVPMLYNYMQHVQ--SSLQSEVEFCQHRSNG 64


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  +  +A L++I A+P+LY++ +  +  SS++ E   C HR NG
Sbjct: 22  GIAVSTIATLTAIIAVPMLYNYMQHVQ--SSLQSEVEFCQHRSNG 64


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  +  +A L++I A+P+LY++ +  +  SS++ E   C HR NG
Sbjct: 22  GIAVSTIATLTAIIAVPMLYNYMQHVQ--SSLQSEVEFCQHRSNG 64


>AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen protein
           101 protein.
          Length = 314

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  +  +A L +I A+P+LY++ +  +  SS++ E   C HR NG
Sbjct: 23  GIAVSTIATLIAIVAVPMLYNYIQHVQ--SSLQSEVEFCAHRSNG 65


>Z66498-1|CAA91290.1|  304|Caenorhabditis elegans Hypothetical
           protein M195.1 protein.
          Length = 304

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  I  VA L++I A+P LY++ +  +  S+++ E   C HR NG
Sbjct: 23  GICISTVATLTAIVAIPSLYNYMQTVQ--STLQTEVDFCVHRTNG 65


>Z49938-3|CAA90188.1|  306|Caenorhabditis elegans Hypothetical
           protein F38A3.2 protein.
          Length = 306

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  I  VA L++I A+P+LY++ +  +  S+++ E   C HR NG
Sbjct: 24  GICISTVATLTAIVAIPLLYNYMQHVQ--STLQTEVDFCKHRTNG 66


>AL132952-24|CAB61143.2|  351|Caenorhabditis elegans Hypothetical
           protein Y51H4A.9 protein.
          Length = 351

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +3

Query: 171 GSTIHQVAELSSIWALPVLYDFSKIFRNISSVRGE*SVCCHRRNG 305
           G  I  +A L++I A+P+LY++ +     SS++ E   C HR +G
Sbjct: 21  GIAISTIATLTAILAIPMLYNYMQ--HVSSSLQTEVDFCQHRTDG 63


>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 698 GAGETRHVPNKVLWVVNWVPXLSLTSRMTVSLSTEAMTHLNFKIYW 835
           G     +VP +++WV + V   +  S   +++ST+A  H   ++ W
Sbjct: 96  GGVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTW 141


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 698 GAGETRHVPNKVLWVVNWVPXLSLTSRMTVSLSTEAMTHLNFKIYW 835
           G     +VP +++WV + V   +  S   +++ST+A  H   ++ W
Sbjct: 96  GGVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTW 141


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 698 GAGETRHVPNKVLWVVNWVPXLSLTSRMTVSLSTEAMTHLNFKIYW 835
           G     +VP +++WV + V   +  S   +++ST+A  H   ++ W
Sbjct: 96  GGVNVLYVPYEMIWVPDIVLYNNADSNYNITISTKATLHYTGEVTW 141


>Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical
           protein C55A1.8 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 730 FVGYVAGLPSALATSGMLTMTVLMPFPFPSTLAHIRGILY 611
           F+G+VA LP   A +  L    L P+PF S L      LY
Sbjct: 162 FIGFVAALPHVQAPAACL--QALEPYPFGSILIISEWFLY 199


>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 322 TLDGWRPFLLWQHTDYSPRTELMFLNILLKSYKTGNAQMDESS 194
           T++G +PF+ +Q+TDY  ++    +N   +S    NA MD++S
Sbjct: 328 TINGAKPFMKYQYTDY-VKSGAKIIN--WRSDFVSNADMDQTS 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,538,185
Number of Sequences: 27780
Number of extensions: 443307
Number of successful extensions: 1101
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)