Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D03
(887 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 31 0.019
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.30
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 1.2
DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 23 2.8
DQ485319-1|ABF21078.1| 175|Apis mellifera icarapin variant 2 pr... 23 4.9
DQ485318-1|ABF21077.1| 223|Apis mellifera icarapin variant 1 pr... 23 4.9
AY939856-1|AAX33236.1| 223|Apis mellifera venom carbohydrate-ri... 23 4.9
AY897570-1|AAW81036.1| 223|Apis mellifera venom protein 2 protein. 23 4.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 8.6
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 8.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 8.6
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 22 8.6
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 30.7 bits (66), Expect = 0.019
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 698 GAGETRHVPNKVLWVVNWVPXLSLTSRMTVSLSTEAMTHLNFKIYW 835
G +T HVP++ +W+ + V + V++ T+A+ H K+ W
Sbjct: 90 GGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVW 135
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.6 bits (56), Expect = 0.30
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +2
Query: 662 QDGHRQHA*SRQGAGETRHVPNKVLWVVNWVPXLSLTSRMTVSLSTEAMTHLNFKIYWT 838
QD Q + G +VP++ +W+ + V + V+ T+A+ H K+ WT
Sbjct: 78 QDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWT 136
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 698 GAGETRHVPNKVLWVVNWVPXLSLTSRMTVSLSTEAMTHLNFKIYW 835
G E HVP+ +W + V + V+L+T+A + ++ W
Sbjct: 94 GGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEW 139
>DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein.
Length = 471
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 620 HLVPVERIGD-VTVHVYGTHFGRVVGF 543
HL+ GD + VH +G +FG + F
Sbjct: 163 HLLMTVDAGDSMFVHTFGAYFGLAISF 189
>DQ485319-1|ABF21078.1| 175|Apis mellifera icarapin variant 2
precursor protein.
Length = 175
Score = 22.6 bits (46), Expect = 4.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 828 ILKFR*VMASVDNETVILEVKLSXGTQFTTQSTLLG 721
+++ R + NET++ V + TT TL+G
Sbjct: 108 LIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIG 143
>DQ485318-1|ABF21077.1| 223|Apis mellifera icarapin variant 1
precursor protein.
Length = 223
Score = 22.6 bits (46), Expect = 4.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 828 ILKFR*VMASVDNETVILEVKLSXGTQFTTQSTLLG 721
+++ R + NET++ V + TT TL+G
Sbjct: 156 LIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIG 191
>AY939856-1|AAX33236.1| 223|Apis mellifera venom carbohydrate-rich
protein precursor protein.
Length = 223
Score = 22.6 bits (46), Expect = 4.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 828 ILKFR*VMASVDNETVILEVKLSXGTQFTTQSTLLG 721
+++ R + NET++ V + TT TL+G
Sbjct: 156 LIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIG 191
>AY897570-1|AAW81036.1| 223|Apis mellifera venom protein 2 protein.
Length = 223
Score = 22.6 bits (46), Expect = 4.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 828 ILKFR*VMASVDNETVILEVKLSXGTQFTTQSTLLG 721
+++ R + NET++ V + TT TL+G
Sbjct: 156 LIRVRVIDVRPQNETILTTVSSEADSDVTTLPTLIG 191
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 8.6
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = +2
Query: 698 GAGETRHVPNKVLWVVNWVPXLSLTSRMTVSLSTEAMTHLNFKIYW 835
G + HVP+ +W + V + V+L T+A + + + W
Sbjct: 98 GGVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVW 143
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.8 bits (44), Expect = 8.6
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 790 IVNG-SHDSSKLQDLLDGLSV 849
+VNG SH+ L DLLD +V
Sbjct: 17 LVNGGSHEKRLLNDLLDTYNV 37
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 284 VLPQEERPPAVEG 322
V PQEERP + G
Sbjct: 219 VSPQEERPKGING 231
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 284 VLPQEERPPAVEG 322
V PQEERP + G
Sbjct: 214 VSPQEERPKGING 226
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,099
Number of Sequences: 438
Number of extensions: 5550
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -