Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D02
         (926 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.002
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    42   0.030
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.28 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    34   5.9  
UniRef50_Q9VEP4 Cluster: CG5225-PA; n=2; Drosophila melanogaster...    34   5.9  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   5.9  
UniRef50_Q4SUB2 Cluster: Chromosome 3 SCAF13974, whole genome sh...    33   7.8  
UniRef50_Q2H239 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +2

Query: 95  DPDMIRYIDEFGQTTTRMQ 151
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 41.5 bits (93), Expect = 0.030
 Identities = 22/42 (52%), Positives = 23/42 (54%)
 Frame = +1

Query: 292 CINESXNARGEAVCVLGALPLXRSLTRCAXXXXXXXXXSAHS 417
           CI +   AR EAV VL ALPL RS TRC          SAHS
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHS 307


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 38.3 bits (85), Expect = 0.28
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 362 ERXSGRAPNTQTASPRALXDSLMQ 291
           +R +  APNTQTASPRAL DSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 290 SALMNRXTRGEKXFAYW 340
           +ALMNR TRGE+ FAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_Q9VEP4 Cluster: CG5225-PA; n=2; Drosophila
           melanogaster|Rep: CG5225-PA - Drosophila melanogaster
           (Fruit fly)
          Length = 594

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 25/104 (24%), Positives = 30/104 (28%)
 Frame = +2

Query: 536 PRLPPPDXXXKNPXXXFXVGKPHRTXXIPXVXPPGNXPPAXSLFPTLXXSRNXXXXXXXS 715
           P  PPP      P        PH     P +  P   PP           +         
Sbjct: 159 PPPPPPPPPPPPPHSHPHSHHPHPPIVTPPIIVPIPLPPQKGEHGHHHHHKGSKGPPGPP 218

Query: 716 GKRGAFSFXPPXXXPXSGFXSFPXQPXXXXPKPPVXPXPXXPFP 847
           G  G     PP   P + +   P  P    P PP  P P  P+P
Sbjct: 219 GPPGTGPPGPPGP-PGTTYPQPPPPPPPPPPPPPSYPYPPYPYP 261


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 5.9
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -2

Query: 253 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 89
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


>UniRef50_Q4SUB2 Cluster: Chromosome 3 SCAF13974, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 3 SCAF13974, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 692

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 28/112 (25%), Positives = 33/112 (29%), Gaps = 2/112 (1%)
 Frame = +2

Query: 521 CLAFFPRLPPPDXXXKNPXXXFXVG-KPHRTXXIPXVXPPGNXPPAXSLFPTLXXSRNXX 697
           C  F P  PPP      P   F +   P      P   PP   PP       +  + +  
Sbjct: 108 CPVFLPLPPPPPPPPPPPLPSFTLSPPPPPPPPPPPPLPPSPRPPPPPYSYAIKHAGHPA 167

Query: 698 XXXXXSGKRGAFSFXP-PXXXPXSGFXSFPXQPXXXXPKPPVXPXPXXPFPG 850
                S      S  P P   P S     P  P    P PP+   P  P  G
Sbjct: 168 AAPPLSSPSPPSSLPPHPSALPRSSLDDLPL-PPPPPPPPPLSCFPTCPATG 218


>UniRef50_Q2H239 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 904

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 26/118 (22%), Positives = 35/118 (29%), Gaps = 1/118 (0%)
 Frame = +2

Query: 545 PPPDXXXKNPXXXFXVGKPHRTXXIPXVXPPGNXPPAXSLF-PTLXXSRNXXXXXXXSGK 721
           PPP    + P          ++   P   PP   PPA   + P               G 
Sbjct: 287 PPPPHYGQYPAPPAPPQYVQQSPYGPPSYPPAQYPPAPGYYAPGAAPPPAPPPPSYPPGT 346

Query: 722 RGAFSFXPPXXXPXSGFXSFPXQPXXXXPKPPVXPXPXXPFPGXFRFXFXPGKTXIXP 895
                +  P   P S   ++P QP      PP  P    P P    F + P +    P
Sbjct: 347 YPPQQYGLPPPPPPSSSAAYPPQPGSTPYPPPHYPPQPPPTPPPGAFHYTPSQPPPYP 404


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,059,129
Number of Sequences: 1657284
Number of extensions: 9582384
Number of successful extensions: 23541
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22139
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 85260991088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)