Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D02
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       29   4.0  
04_03_0904 + 20717005-20718087                                         29   5.2  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 29/112 (25%), Positives = 31/112 (27%), Gaps = 1/112 (0%)
 Frame = +2

Query: 524 LAFFPRLPPPDXXXKNPXXXFXVGKPHRTXXIPXVXPPGNX-PPAXSLFPTLXXSRNXXX 700
           + F    PPP      P   F           P   PP    PP    FP L    +   
Sbjct: 229 IPFLTPPPPPFLPFPLPPIPFLTPPSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPS 288

Query: 701 XXXXSGKRGAFSFXPPXXXPXSGFXSFPXQPXXXXPKPPVXPXPXXPFPGXF 856
                    AF F  P   P   F   P       P PP  P P   FP  F
Sbjct: 289 PPPPPPP--AFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPF 338


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 35/157 (22%), Positives = 45/157 (28%), Gaps = 1/157 (0%)
 Frame = +2

Query: 380 GSFGCGXXYQLTP-KAVIXVSTESGDNAGKXHVNQKASKRPETVKKAGCLAFFPRLPPPD 556
           G +G G     TP K          ++    H   K  K P+  K     A+ P  P P 
Sbjct: 25  GGYGGGYTPTPTPVKPAPKPEKPPKEHKPPHHHEPKPEKPPKEHKPP---AYTPPKPTPT 81

Query: 557 XXXKNPXXXFXVGKPHRTXXIPXVXPPGNXPPAXSLFPTLXXSRNXXXXXXXSGKRGAFS 736
                P       KP      P   PP + P   +  PT    +          K     
Sbjct: 82  PPTYTPTP-----KPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAP 136

Query: 737 FXPPXXXPXSGFXSFPXQPXXXXPKPPVXPXPXXPFP 847
           + P    P       P  P    P+P   P P  P P
Sbjct: 137 YTPTPTPPTYKPQPKPTPPPTYKPQPKPTPTPYTPTP 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,449,125
Number of Sequences: 37544
Number of extensions: 288511
Number of successful extensions: 810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)