Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D02
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    32   0.67 
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    32   0.67 
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 33/132 (25%), Positives = 42/132 (31%)
 Frame = +2

Query: 437 STESGDNAGKXHVNQKASKRPETVKKAGCLAFFPRLPPPDXXXKNPXXXFXVGKPHRTXX 616
           S+ S  N    + N  A+K P+     G L F   +P      K       +G P     
Sbjct: 61  SSGSSSNGNSGNGNGPAAKPPQMSGGLGGL-FANGMPMKPSENKIRRATTSIGPPPTASS 119

Query: 617 IPXVXPPGNXPPAXSLFPTLXXSRNXXXXXXXSGKRGAFSFXPPXXXPXSGFXSFPXQPX 796
            P V PP   P      P++  S +           GA S  PP   P     S P    
Sbjct: 120 APPVPPPAPVPAVEGKKPSIVSSSSF-------SHHGATSSAPPPPPPPPP-VSVPSSKP 171

Query: 797 XXXPKPPVXPXP 832
              P PP    P
Sbjct: 172 TPPPPPPAQQKP 183


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 33/132 (25%), Positives = 42/132 (31%)
 Frame = +2

Query: 437 STESGDNAGKXHVNQKASKRPETVKKAGCLAFFPRLPPPDXXXKNPXXXFXVGKPHRTXX 616
           S+ S  N    + N  A+K P+     G L F   +P      K       +G P     
Sbjct: 61  SSGSSSNGNSGNGNGPAAKPPQMSGGLGGL-FANGMPMKPSENKIRRATTSIGPPPTASS 119

Query: 617 IPXVXPPGNXPPAXSLFPTLXXSRNXXXXXXXSGKRGAFSFXPPXXXPXSGFXSFPXQPX 796
            P V PP   P      P++  S +           GA S  PP   P     S P    
Sbjct: 120 APPVPPPAPVPAVEGKKPSIVSSSSF-------SHHGATSSAPPPPPPPPP-VSVPSSKP 171

Query: 797 XXXPKPPVXPXP 832
              P PP    P
Sbjct: 172 TPPPPPPAQQKP 183


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -3

Query: 876 PGWXXKRKXPGKGXXGSG*TGGLGXXXXGWXGNDXNPEXGXXKGG 742
           PGW       G+G  GSG  GG G    GW  N      G   GG
Sbjct: 46  PGWGGGGPGWGRGGGGSGWGGGRG---GGWGNNGGGGNWGGNGGG 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,607
Number of Sequences: 27780
Number of extensions: 237994
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)