Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_D01
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     73   3e-13
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    71   1e-12
02_05_0686 - 30900748-30902167,30903442-30904742                       31   0.94 
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    31   1.6  
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987...    30   2.2  
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533...    29   3.8  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   6.7  
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    28   8.8  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 37/75 (49%), Positives = 48/75 (64%)
 Frame = +1

Query: 100 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 279
           MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 280 RMGESDDCIVRLTKK 324
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 36/75 (48%), Positives = 47/75 (62%)
 Frame = +1

Query: 100 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 279
           MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 280 RMGESDDCIVRLTKK 324
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 707 PPPREKGVXXWPPSVSXXPXPXPP-XLRXGGXGXTPPQXG 823
           PPP  KG    PP     P P PP   + GG    PP+ G
Sbjct: 346 PPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 92  HIKCRTTPVNSLTCTARGNARPATASST 175
           H++CR+TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
            19799503-19799671,19799758-19799850
          Length = 1330

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 728  PPFPGGVAXX*CRK--NXPHLPLDLKHKMXAIVGVNCL 621
            PPF   +    C +  N PHLP  LKH     VG++CL
Sbjct: 944  PPFLVTLVVKECLELLNLPHLPYSLKHLGINKVGISCL 981


>02_05_1007 +
           33452774-33452993,33453028-33453122,33453208-33453329,
           33453392-33453694,33454657-33454918,33455039-33455140,
           33455931-33457151,33457250-33457342
          Length = 805

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +1

Query: 52  LSHLVNSXVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATG 231
           +S  ++S V     YK  +D  +  DL+ P +C  + + IH KD   V L   DV  A  
Sbjct: 68  ISRRISSGVEDAAGYKQPSDP-QMKDLFLPFRCFCTRKDIHCKD---VVLDDHDVSKAIV 123

Query: 232 R-AADTSKMYVVCGAIRRMG 288
             AA  +   +V GA  R G
Sbjct: 124 EFAAHAAIEKLVVGATARGG 143


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +2

Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPP 814
           PPP        PP     P P P     GG G  PP
Sbjct: 352 PPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPP 387


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +2

Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPPQ 817
           PPP        PP     P P PP ++ G     PP+
Sbjct: 355 PPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPPK 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,321,329
Number of Sequences: 37544
Number of extensions: 390472
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)