Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_D01
(900 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 112 4e-25
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.5
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 29 4.5
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.0
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 112 bits (269), Expect = 4e-25
Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = +1
Query: 100 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 276
MQNDAG+ V+LY PRKCS+SNR+I KDHASVQ+ DVDP TGR S Y +CGAI
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60
Query: 277 RRMGESDDCIVRLTKKDGILAKN 345
RRMGESDD I+RL +KDG++ ++
Sbjct: 61 RRMGESDDAILRLAQKDGLVPRD 83
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = -2
Query: 269 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 90
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 89 RPHGTXELTRCESK 48
+P+ + T C+SK
Sbjct: 852 QPY---QFT-CDSK 861
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXG--GXGXTPP 814
PPP G PP + P P PP R G G G PP
Sbjct: 299 PPPPPPGRTPGPPGMPGMPPPPPPS-RFGPPGMGGMPP 335
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPP 814
PPP G PP + P P PP +R G PP
Sbjct: 320 PPPSRFG----PPGMGGMPPPPPPGMRYPGGMPPPP 351
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXG--GXGXTPP 814
PPP G PP + P P PP R G G G PP
Sbjct: 309 PPPPPPGRTPGPPGMPGMPPPPPPS-RFGPPGMGGMPP 345
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPP 814
PPP G PP + P P PP +R G PP
Sbjct: 330 PPPSRFG----PPGMGGMPPPPPPGMRYPGGMPPPP 361
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = -2
Query: 269 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 90
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 89 RPHGTXELTRCESK 48
+P+ + T C+SK
Sbjct: 852 QPY---QFT-CDSK 861
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 710 PPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPPQXG 823
PP G+ PPS S P P R GG P G
Sbjct: 106 PPSRSGMIPVPPSRSGGPPAPMPVSRAGGPPRAPTSMG 143
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPPQXG 823
PPP G PP P P PP PPQ G
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 318
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXP---XPPXLRXGGXGXTPPQXG 823
PPP G PP+ S P P PP R G PP G
Sbjct: 264 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 305
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPPQXG 823
PPP G PP P P PP PPQ G
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 339
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXP---XPPXLRXGGXGXTPPQXG 823
PPP G PP+ S P P PP R G PP G
Sbjct: 285 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 326
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXPXPPXLRXGGXGXTPPQXG 823
PPP G PP P P PP PPQ G
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAG 324
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = +2
Query: 707 PPPREKGVXXWPPSVSXXPXP---XPPXLRXGGXGXTPPQXG 823
PPP G PP+ S P P PP R G PP G
Sbjct: 270 PPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRG 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,886
Number of Sequences: 27780
Number of extensions: 301817
Number of successful extensions: 777
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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