Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C24
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   204   1e-53
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   204   2e-53
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   2.1  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   3.6  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.7  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   4.7  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  204 bits (498), Expect = 1e-53
 Identities = 95/137 (69%), Positives = 111/137 (81%), Gaps = 1/137 (0%)
 Frame = +2

Query: 194 LGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFH 373
           LG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD FH+R+R HPFH
Sbjct: 36  LGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFH 95

Query: 374 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQPIMSVRPNDRWKAQVIEALXRA 553
           V+RINKMLSCAGADRLQTGMR AFGKP G V RV IGQ +MSVR  D  +A  IEAL R 
Sbjct: 96  VVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRC 155

Query: 554 KFXFPDVKRLRI-KKWG 601
           ++ FP  +R+ + KKWG
Sbjct: 156 QYKFPGQQRIIVSKKWG 172



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/37 (83%), Positives = 32/37 (86%)
 Frame = +1

Query: 88  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDFG 198
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFD G
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG 37


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  204 bits (497), Expect = 2e-53
 Identities = 95/137 (69%), Positives = 111/137 (81%), Gaps = 1/137 (0%)
 Frame = +2

Query: 194 LGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFH 373
           LG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD FH+R+R HPFH
Sbjct: 36  LGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFH 95

Query: 374 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQPIMSVRPNDRWKAQVIEALXRA 553
           V+RINKMLSCAGADRLQTGMR AFGKP G V RV IGQ +MSVR  D  +A  IEAL R 
Sbjct: 96  VVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRC 155

Query: 554 KFXFPDVKRLRI-KKWG 601
           ++ FP  +R+ + KKWG
Sbjct: 156 QYKFPGQQRIIVSKKWG 172



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 31/37 (83%), Positives = 32/37 (86%)
 Frame = +1

Query: 88  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDFG 198
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFD G
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLG 37


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = -3

Query: 269  SAVHIRRTP---SARTVESRQRSLSSYPKSKIRILGSGTPRQNLDFGYGLFLQYR*HLAG 99
            S VH   TP   SAR  ES ++ L+  P    +   S  P +      G F Q   HLA 
Sbjct: 898  SKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYIPPRRQQQQKGFFAQINDHLAQ 957

Query: 98   RRPMV 84
            R  M+
Sbjct: 958  RGNML 962


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 326 SSLRGTYC-SRYVLPPKPLSSAVHIRRTPSARTVESRQRSLSSYPKSKIR 180
           S+LR  YC S+Y+L  K +   ++IR T    T +  Q   +S PK+KIR
Sbjct: 269 SNLR--YCLSQYILM-KGIGIGINIRHTRCEFTKQLTQLLPTSLPKNKIR 315


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 463  STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 347
            +T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 957  TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +2

Query: 179  SVSSILGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 334
            S+ + + KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1029 SLQTEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,770
Number of Sequences: 5004
Number of extensions: 64775
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)