Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_C24
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 188 4e-48
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 188 5e-48
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 181 6e-46
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297... 31 1.2
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.6
01_07_0291 + 42555233-42555444,42556515-42556550,42556652-425567... 30 2.1
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.8
01_05_0561 - 23296977-23297174,23297304-23297431,23297990-232983... 29 5.0
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150... 29 6.6
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 8.7
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 8.7
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 188 bits (459), Expect = 4e-48
Identities = 90/137 (65%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Frame = +2
Query: 194 LGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFH 373
+G K+ VD+FP CVHLVS E E +SSEALEA RI CNKY+ KN GKD FH+R+R+HPFH
Sbjct: 36 VGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFH 95
Query: 374 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQPIMSVRPNDRWKAQVIEALXRA 553
V+RINKMLSCAGADRLQTGMRGAFGKPQGT RV IGQ ++SVR + EAL RA
Sbjct: 96 VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRA 155
Query: 554 KFXFPD-VKRLRIKKWG 601
KF FP K + +KWG
Sbjct: 156 KFKFPGRQKIIHSRKWG 172
Score = 79.0 bits (186), Expect = 5e-15
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +1
Query: 88 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDFG 198
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D G
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVG 37
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 188 bits (458), Expect = 5e-48
Identities = 90/137 (65%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Frame = +2
Query: 194 LGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFH 373
+G+K+ + DDFPLCVHLVS E E +SSEALEA RI CNKY+ K+ GKD FH+R+ HP+H
Sbjct: 343 VGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGKDAFHLRVCAHPYH 402
Query: 374 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQPIMSVRPNDRWKAQVIEALXRA 553
V+RINKMLSCAGADRLQTGMRGAFGKP GT RVRIGQ ++SVR D A EAL RA
Sbjct: 403 VLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRA 462
Query: 554 KFXFPDVKRLRIK-KWG 601
KF FP +R+ KWG
Sbjct: 463 KFKFPGRQRVIFSAKWG 479
Score = 70.1 bits (164), Expect = 2e-12
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = +1
Query: 100 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDFG 198
P RCYR KNKPYPKSR+CRGVPDPKIRIFD G
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVG 344
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 181 bits (441), Expect = 6e-46
Identities = 87/137 (63%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Frame = +2
Query: 194 LGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFH 373
+G K+ VD+F CVHLVS E E ++SEALEA RI CNKY+ K+ GKD FH+R+R+HPFH
Sbjct: 32 VGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFH 91
Query: 374 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQPIMSVRPNDRWKAQVIEALXRA 553
V+RINKMLSCAGADRLQTGMRGAFGKPQGT RV IGQ ++SVR EAL RA
Sbjct: 92 VLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRA 151
Query: 554 KFXFPD-VKRLRIKKWG 601
KF FP K + +KWG
Sbjct: 152 KFKFPGRQKIIESRKWG 168
Score = 64.1 bits (149), Expect = 1e-10
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 109 CYRYCKNKPYPKSRFCRGVPDPKIRIFDFG 198
CYR KNKPYPKSR+CRGVPDPKIRI+D G
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVG 33
>05_01_0378 +
2970528-2971008,2971961-2972036,2972108-2972253,
2972300-2972817
Length = 406
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 391 NVIVRWS**APNWDAWCVWQASGYCXPCSHWTTHHVRAP 507
NV+ RW P AWC + S + PCS W+ ++ P
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWSDVNIVRP 379
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.6
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = -2
Query: 492 MGCPMRTRXTVP*GLPNAPRIPVWSLSAPAH--DNILLMRITWKG*SLMRIWN*SFPQFF 319
+ CP+ + VP LP++P P++S ++P + + + + +++ + P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYN 1684
Query: 318 -TRYLLQQIRPASKASELSCSYS-SDTKCTHSGKSSTFALFLPKIEDTDLGIRYTPTEPR 145
T P+ + S SYS + + + S +++ P T Y+PT P
Sbjct: 1685 PTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPS 1744
Query: 144 F 142
+
Sbjct: 1745 Y 1745
>01_07_0291 +
42555233-42555444,42556515-42556550,42556652-42556796,
42556885-42556938,42557130-42557260,42557830-42558056,
42558670-42558846,42558928-42559076
Length = 376
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -3
Query: 287 PPKPLSSAVHIRRTP--SARTVESRQRSLSSYPKSKIRILGSGTP 159
P P SS V + R+P SAR + SLS+ P+ + R GS +P
Sbjct: 23 PSPPASSHVPLPRSPASSARPRRASSVSLSTAPRPRARAAGSDSP 67
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 227 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 331
P C +HL SD Y S E ++AG+ C L K G
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>01_05_0561 -
23296977-23297174,23297304-23297431,23297990-23298362,
23298629-23299069
Length = 379
Score = 29.1 bits (62), Expect = 5.0
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Frame = +2
Query: 56 RGCGVTL*RSPWGAGQRDATGTAKINRIRNRGSVGVY-LIPRSVSSILGKK------RAN 214
+GC V WG ATG A I N GS ++ L P S + L K+ A
Sbjct: 222 KGCYVATGHGGWGILNAPATGAALAELILN-GSASIFDLSPFSPARFLNKRTRFSLTSAK 280
Query: 215 VDDFPLCVHLVSDEYEQ--LSSEALEAGRICCNK-YLVKNCGK 334
+ D C+++ E E L + L+ + NK L++N K
Sbjct: 281 LPDAMFCLNVNRLEQEDAILPQDLLQDKVVAFNKMQLIRNVSK 323
>03_06_0367 -
33413530-33413710,33414347-33414681,33414908-33415023,
33415107-33415235,33415657-33415723,33415780-33415854,
33416054-33416149,33416404-33416592
Length = 395
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = -2
Query: 291 PASKASELSCSYSSDTKCTHSGKSSTFALFLPKIEDTDLGIR 166
PA KASE C SD K F+LF K D D GIR
Sbjct: 297 PALKASE-KCKVKSDAK-QGGYLQKVFSLFPQKAYDVDTGIR 336
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 446 GKPQGTVXRVRIGQPIMSVRPND 514
G PQ T+ R+ +G P +S++ ND
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 212 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 304
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,923,262
Number of Sequences: 37544
Number of extensions: 499113
Number of successful extensions: 1219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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