Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C24
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   190   1e-48
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    31   0.84 
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lecti...    28   7.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  190 bits (463), Expect = 1e-48
 Identities = 91/137 (66%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
 Frame = +2

Query: 194 LGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFH 373
           LG KRANVD FP CVH++S+E E LSSEALEA RIC NKY+VKNCGKD FH+R+R HPFH
Sbjct: 36  LGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFH 95

Query: 374 VIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQPIMSVRPNDRWKAQVIEALXRA 553
           V RINKMLSCAGADRLQTGMRGA+GKPQG V RV IG  + S+R  +      IEA  RA
Sbjct: 96  VTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRA 155

Query: 554 KFXFPDVKRL-RIKKWG 601
           KF FP  + +   +KWG
Sbjct: 156 KFKFPGRQIIVSSRKWG 172



 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 34/37 (91%), Positives = 34/37 (91%)
 Frame = +1

Query: 88  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDFG 198
           MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFD G
Sbjct: 1   MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLG 37


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 327 QFFTRYLLQQIRPA--SKASELSCSYSSDTKCTHSGKSSTFALFLPKIEDTDLGIRYTPT 154
           +FF  +L Q+IR A  S  S  S S SS +    S  SS+++ + P I        Y+P+
Sbjct: 214 EFFRYFLTQRIRHARDSSGSHESYSGSSSSSSYSSSDSSSYSSYTPSISSNSDYTSYSPS 273


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 453 GLPNAPRIPVWSLSAPA 403
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF016686-15|AAB66231.3|  572|Caenorhabditis elegans C-type lectin
           protein 43 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -2

Query: 270 LSCSYSSDTKCTH---SGKSSTFALFLPKIEDTDLGIR 166
           LSC Y S + C+    SG +S +  F P   +TD+G R
Sbjct: 255 LSCQYPSASSCSWTDGSGTTSNYNNFAPGNPNTDVGTR 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,257,777
Number of Sequences: 27780
Number of extensions: 391900
Number of successful extensions: 941
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)