Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C23
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    28   2.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   6.5  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    26   6.5  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    26   8.6  

>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 374 LETPIVQLDKFLCKSLDV-VEKSMPSIYMPPEEMYSETRQYVLRRADSV 517
           +E  I  +DK +   ++  + +S+P++  PP + +SET  Y     DS+
Sbjct: 208 IEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETDLYADEELDSI 256


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 284 ESNPLFRWSMSLGEKSLATGIQLALPAVQLLET--PIV 391
           ES  +F W   +GE+     IQ +L A+QLLE   P+V
Sbjct: 431 ESFMMFVWKKKIGEELKKWIIQDSLKALQLLEAWDPVV 468


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 227 IPIVVSGIGVTEKLYFKIRESNPLF 301
           IP++ SG+    K+   +R+SNP+F
Sbjct: 263 IPLMASGLLEAHKVQSIVRDSNPMF 287


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
 Frame = +2

Query: 209 VSRVASIPIVVSGIG-VTEKL---YFKIRESNPLFRWSMSL-GEKSLATGIQLALPAVQL 373
           +S+  S  +++ G G V EKL   +  +R    +  W+      KSLA+     LP++Q+
Sbjct: 127 LSKEDSTSLLIIGSGKVAEKLIHAHCSVRPIRSVRIWNHRFESAKSLASRASKELPSIQI 186

Query: 374 LETPIVQLDKFLCKSLDVVEKS 439
              PI  L+  + K  D++  +
Sbjct: 187 DAVPIQNLENAV-KCSDIISSA 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,456,809
Number of Sequences: 5004
Number of extensions: 68383
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)