Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_C23
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205... 34 0.18
05_02_0094 + 6562212-6563399 32 0.74
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 31 1.3
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 30 2.3
06_01_0768 + 5742938-5743196,5743291-5744729 30 3.0
10_08_0207 - 15822080-15822190,15822886-15822945,15823021-158231... 29 5.2
03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577... 29 5.2
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 5.2
07_01_0778 - 6009290-6010287,6010351-6010444 29 6.9
03_06_0212 + 32400982-32402055 29 6.9
10_02_0003 + 4022220-4022900 28 9.1
09_03_0139 + 12692844-12694982 28 9.1
>02_05_1130 -
34319558-34319603,34320236-34320335,34320498-34320577,
34320680-34320840,34321602-34321731,34322055-34322230,
34322873-34323068,34323768-34323889,34324376-34324468,
34324672-34324740,34325259-34325423,34325771-34326061
Length = 542
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -1
Query: 557 PSSANPRQLCLVASLNPHGGARIDASLSTSPLEAYKLKAYSSRPHPATCRGTCPVV 390
PS+ +P A+ +P GG A+ S PL A + RP P RG C VV
Sbjct: 12 PSNPSPSSRSAAAAFSPRGGVHFAAARSGLPL-ACAAPRHRGRPPPRRRRGGCLVV 66
>05_02_0094 + 6562212-6563399
Length = 395
Score = 31.9 bits (69), Expect = 0.74
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 557 PSSANPRQLCLVASLNPHGGARIDASLSTSPLEAYKLKAYSSRPHPATCRGTCPVVRSEF 378
PSS PR+ L ++ +G AR+ P A + A+ + P P T R ++ +
Sbjct: 9 PSSLRPREPLLCRVISAYGRARL-------PAAARRAFAHPAFPAPRTARALNTLLHALL 61
Query: 377 PGVEP-PGVLAECRSLGTSHP 318
P P +L+ECR G HP
Sbjct: 62 ACRAPLPELLSECRGSGI-HP 81
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 31.1 bits (67), Expect = 1.3
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +2
Query: 350 LALPAVQLLETPIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYV--LRRADSVTR 523
L + A L T +++KF+ K+LD E + +Y+ PE++ S++++++ L + R
Sbjct: 168 LGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKI-SKSKRFMSKLEKCHHAGR 226
Query: 524 LGTAVLD 544
L +D
Sbjct: 227 LSLIAID 233
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = -3
Query: 903 IGXVMXTRKIP*FFPG*HRXFCNQFRXXHQKRGFVXLIALASAQSLPGEXXXQXPFEPGS 724
+G V+ + PG HR C++ R + G L+ +A++ PG Q P PG
Sbjct: 124 LGEVLTATSLLAATPG-HRRDCHRARPPPRPGG--RLVPVAASPGSPGRRLAQPPPRPGG 180
Query: 723 VLHRLGXSGPARXPFRP 673
L + S P R +RP
Sbjct: 181 RLAQAAAS-PFRCLYRP 196
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 3.0
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -2
Query: 325 LTQGHRPTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLI 179
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>10_08_0207 -
15822080-15822190,15822886-15822945,15823021-15823181,
15825573-15825629,15826521-15826584
Length = 150
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -2
Query: 442 HTLLDHIQRLAEELVQLYDRSFQELNRREC*LNA 341
H+ LD ++R EE+ +LY F+ L R++ +NA
Sbjct: 72 HSELDKLKREVEEMKKLYKELFESLARKDKDVNA 105
>03_03_0233 -
15656930-15656998,15657459-15657591,15657677-15657729,
15658640-15658690,15658790-15658859,15659009-15659223,
15660465-15660570,15660686-15660753,15660861-15661148,
15661253-15661408,15661450-15661544,15661632-15661788
Length = 486
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 662 MRWTGLKGXRAGPXQPKRCSTEPGSK 739
++W GLK + P QP +C + G+K
Sbjct: 419 LKWDGLKNFLSLPRQPLKCGSSKGTK 444
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 209 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 361
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
>07_01_0778 - 6009290-6010287,6010351-6010444
Length = 363
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -2
Query: 433 LDHIQRLAEELVQLYDRSFQELNR 362
L +Q +ELV L DRS QE+NR
Sbjct: 42 LQMLQLFGKELVALIDRSIQEINR 65
>03_06_0212 + 32400982-32402055
Length = 357
Score = 28.7 bits (61), Expect = 6.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 346 SASTPGGSTPGNSDRTTGQVPLQVAGC-GREEYAFNLYASRGDVLRDASIRAPPCGFS 516
+AS+ GG GN G G G Y F+ +S GD + APP FS
Sbjct: 183 AASSAGGGAIGNGADCVGIAHPGKGGAEGASTYGFSAASSFGDAPPIGMVPAPPFNFS 240
>10_02_0003 + 4022220-4022900
Length = 226
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 346 SASTPGGSTPGNSDRTTGQVPLQVAGCGREEYAFNLYASRGDVLRDASIRAPPCGFSDAT 525
SAS P S P + +GQVP A + A SR ++L + + P S T
Sbjct: 21 SASAPAPSLPPLAPTASGQVP-NTADMAKAAAAARALQSRAEILSTSQLLVPQAAPSQPT 79
Query: 526 RHS 534
S
Sbjct: 80 AAS 82
>09_03_0139 + 12692844-12694982
Length = 712
Score = 28.3 bits (60), Expect = 9.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 620 GTCRRICQRL*AHGRERSRWPPSSANPRQLCLVASLNPHGGARIDASLSTSP 465
G R+ + L A SR SA + L+ASL HGGA++ A L P
Sbjct: 608 GLVARLAEALAASSASSSR----SARDHSVSLLASLCRHGGAKVVAVLGRMP 655
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,327,299
Number of Sequences: 37544
Number of extensions: 520086
Number of successful extensions: 1329
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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