Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C23
         (920 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   3.2  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   7.5  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   9.8  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 563 WPPSSANPRQLCLVASLNPHGGARID 486
           W P  A  R+LC  AS N H  +R+D
Sbjct: 311 WTPERAQLRELCKEASDNAH--SRVD 334


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 747 AXXTHQASSGPKPRLSKXQIXVFGVXRGIGC 839
           A  THQA S  +P      + + G   G GC
Sbjct: 169 ARLTHQAPSSDRPAQRTRILGLAGPLHGAGC 199


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 235  RRVRYWSDRKIVLQNKGVQ 291
            RRV  W +R+ +++N G+Q
Sbjct: 1151 RRVARWRERQRMIRNGGIQ 1169


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 901,324
Number of Sequences: 2352
Number of extensions: 17894
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100055142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)