Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C22
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...   126   6e-30
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    43   5e-05
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    30   0.39 
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   6.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   8.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   8.5  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   8.5  

>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score =  126 bits (303), Expect = 6e-30
 Identities = 61/92 (66%), Positives = 70/92 (76%), Gaps = 4/92 (4%)
 Frame = +3

Query: 198 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 377
           IK+LHE +GH+VT E   G  YRGKLIEAEDNMNCQM  ++VT RDGRV+ L+ VYIRGS
Sbjct: 5   IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64

Query: 378 KIRFLILPDMLKNAPMFK----RQGNKPTAGR 461
            IRFLI+PDML+NAPMFK    R    PT GR
Sbjct: 65  HIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +3

Query: 198 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 377
           ++ L +     V+ E   G +  G +   +  MN  +  V +T +      +E + IRG+
Sbjct: 4   VRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGN 63

Query: 378 KIRFLILPDMLKNAPMFKRQGNKP 449
            IR+ ILPD L    +      KP
Sbjct: 64  NIRYYILPDSLPLDTLLIDDSTKP 87


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = -2

Query: 342 LGHLCM*LLRESFGNSYYPQLQLI-------SLYKLHRYLFHKSL-HDLPP 214
           L H+ +   +  + N Y+P+ + +       ++Y LHR + HKSL H LPP
Sbjct: 114 LDHVSLIPPKSYYENGYFPEKETLVEARNVGAVYALHRIMSHKSLQHALPP 164


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 403 SGNIKNLILE-PRMYTFSSCATRPSLYVTVTRVIWQFILSSASIN 272
           +GNI N+ L  P    F +   R   + TVT+ +W  I  + S+N
Sbjct: 416 TGNISNMSLSIPPSLCFLASDFRVIAFQTVTKKVWNQIEDTISVN 460


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 580 IFFR*LKLYLSYISIVKELFHYHSYILIYLSEKN-TKFW 693
           IFF  L L+L Y S++ +LF +  Y+++ L++    +FW
Sbjct: 22  IFFSSLILFLVYKSVLSKLF-FIKYLMLNLTKVGLRRFW 59


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 364 YTFSSCATRPSLYVTVTRVIWQFILSSASINF 269
           Y F    T PSL++T+ ++ W+ IL     +F
Sbjct: 274 YRFERMKT-PSLFITIHKIFWRQILGMGVSSF 304


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 210 HEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYI 368
           H+   H ++  T    +         DN+N +++L TVT  D  V+ L   Y+
Sbjct: 679 HDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYL 731


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -1

Query: 475 IALFPRPAVGLFPCLLNIGAFFNMSGNIKNLILEPRMYTFSSC 347
           I+LFP+  V +F   L I AF N   N KN   E  +  FS C
Sbjct: 223 ISLFPKSHVVIFHYYLGIVAFLNQ--NYKNASAELEI-AFSLC 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,555,457
Number of Sequences: 5004
Number of extensions: 72615
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)