Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C21
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    28   2.1  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.8  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   4.8  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   6.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   6.3  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   8.4  

>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 285 KLLNLFQLKYAHWMLNWSSTSSGELRVVICSTWCAGQLAYVKHGS 419
           K+LN+ + K +HW +   S  +G L +    +W A  L  +K G+
Sbjct: 140 KILNISKYKSSHWRIFSVSALTG-LNIKDAISWLANDLKEIKLGT 183


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 144 ECSLRKRETLPCN*LNAS*KFITSVVFRDSSCK 242
           ECS+     L    LN S ++ITS+V  DSSC+
Sbjct: 231 ECSVPVVLKLRSYALNESNQYITSIVSPDSSCE 263


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 310 FNWKRFSSFLPPEGRHYSYIISRLQEESRN 221
           F+W R +SF    G +  Y  SRL    RN
Sbjct: 485 FDWSRMTSFEGDTGPYLQYAHSRLSSVRRN 514


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 353 RATGRDLFDLVCRTIGLRETWFFGLQFEDTKHFISWL 463
           ++TG D FDL+ + +     W++ L    T  F +WL
Sbjct: 18  KSTGSDAFDLILKVLLWTAPWYYCL----TTLFFTWL 50


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 405 RRPIVLHTRSNKSRPVARHSRLNSNSASNVHTLTGKDLA--AFFLRKGGIILI 253
           R PIV    S+K  P   +     N   N+  +TG ++A  + FLR+  II I
Sbjct: 713 RHPIVEKGLSHKLIPFTPNDCFVGNGNVNIWLITGPNMAGKSTFLRQNAIISI 765


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 414 HVSRRPIVLHTRSNKSRPVARHSRLNSNSASNVHTLT 304
           H S R +   T+SN S+P+ R  R N  +  N+ T +
Sbjct: 372 HTSSRVLNTVTKSNNSKPIQRPLRENIFTLPNLLTFS 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,597,620
Number of Sequences: 5004
Number of extensions: 74170
Number of successful extensions: 228
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)