Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C21
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.6  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    24   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   2.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 443 LCLRIGDRRTMFHVGQLSC 387
           LCL  GDR + +H   L+C
Sbjct: 186 LCLVCGDRASGYHYNALTC 204


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 446 VLCLRIGDRRTMFHVGQLSC 387
           VLC   GD+ + FH G  SC
Sbjct: 7   VLCRVCGDKASGFHYGVHSC 26


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 446 VLCLRIGDRRTMFHVGQLSC 387
           VLC   GD+ + FH G  SC
Sbjct: 65  VLCRVCGDKASGFHYGVHSC 84


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 616 YRLLHLEEQQVLCDLLDQFFGH 551
           +R +H +E+   CD+ ++ F H
Sbjct: 138 HRRIHTKERPYKCDVCERAFEH 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,338
Number of Sequences: 438
Number of extensions: 5406
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)