Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C19
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    22   6.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.4  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   8.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 564 PNXGATPXKNFXXKAPXXXXTPKTPLXXXFSPXPPPP 674
           PN   +P  +F    P     P T L   ++P PPPP
Sbjct: 161 PNSMVSPPPSFQ---PPSAAAPATSLPSDYNPPPPPP 194


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 890 GGXXGLGNXPGGGRXXPXXFKGKKGEF 810
           GG  G G  PGG    P  F G  G F
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGF 247


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 22.2 bits (45), Expect(2) = 6.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +3

Query: 657 PXPPPPQXNXKKXXPP 704
           P PPPP     +  PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326



 Score = 22.2 bits (45), Expect(2) = 6.2
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 816 PLFPFEXXGAXPTPPRXVSQPXXAPPP 896
           PL P       P PPR        PPP
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 853 PPPGXFPNPXXPPPP 897
           PPP  F  P  PPPP
Sbjct: 13  PPPPGFEPPSQPPPP 27


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 804 QXKFPLFPFEXXGAXPTPPRXVSQPXXAP 890
           Q ++P +P+    A  +PPR    P  AP
Sbjct: 450 QYQYPSYPYPMFPAPFSPPRNAMMPIPAP 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,953
Number of Sequences: 5004
Number of extensions: 15267
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)