Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C19
         (897 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

K03206-1|AAA60187.1|  178|Homo sapiens PRB1 protein.                   31   5.7  
U47742-1|AAC50662.1| 2004|Homo sapiens monocytic leukaemia zinc ...    26   8.5  

>K03206-1|AAA60187.1|  178|Homo sapiens PRB1 protein.
          Length = 178

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 19/78 (24%), Positives = 27/78 (34%)
 Frame = +2

Query: 539 PQGGKXVXPQXGGNPRKKFXXKGPXXXPXPXNAPFXXFFPKXPPPPXKX*KKXPPXXXXG 718
           PQGGK   P   G  + +     P     P         P+ PPPP     + P     G
Sbjct: 102 PQGGKPQGPPAQGGSKSQSARAPPGKPQGPPQQEGNN--PQGPPPPAGGNPQQPQAPPAG 159

Query: 719 KPXXKXKXSRAXPPXKTP 772
           +P    +  +   P + P
Sbjct: 160 QPQGPPRPPQGGRPSRPP 177


>U47742-1|AAC50662.1| 2004|Homo sapiens monocytic leukaemia zinc
            finger protein protein.
          Length = 2004

 Score = 25.8 bits (54), Expect(2) = 8.5
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 582  PXKNFXXKAPXXXXTPKTPLXXXFSPXPPPPQ 677
            P  N   K+P      + P      P PPPPQ
Sbjct: 1626 PAANCSIKSPQSCVVERPPSNQQQQPPPPPPQ 1657



 Score = 23.0 bits (47), Expect(2) = 8.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 657  PXPPPPQXNXKKXXPP 704
            P PPPPQ       PP
Sbjct: 1659 PQPPPPQPQPAPQPPP 1674


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,296,360
Number of Sequences: 237096
Number of extensions: 1254512
Number of successful extensions: 8657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7617
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)