Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C17
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   5.0  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   8.7  

>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 569 VRSLERTLSSV--VDLPQFQDGSIHNEPVLGYRA 664
           V  + ++LS++   DLP F++  IH+ PV  YR+
Sbjct: 5   VDQISKSLSTLGLQDLPVFREADIHHNPVDVYRS 38


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 276 MLLILKMRCIFNFSVSIENSFK*VYKTRYYCKMFANFP 163
           M++ + + CIF+ +V+     + V   R++C  F + P
Sbjct: 143 MIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFFGSSP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,003
Number of Sequences: 5004
Number of extensions: 65630
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)