Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C17
         (927 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    29   6.9  
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324...    29   6.9  

>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 409 LALFATRLRNRNRSSNHILISIPGARPDVLSVDSLFSVDQGQRYAYNLGE 558
           +ALF   L   N+ +   L+ IPG   + L   +LFSV   + Y  N GE
Sbjct: 377 IALFVPELGGGNQPARVSLVQIPG--KEELRQKNLFSVSDCKMYWQNSGE 424


>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
            3242494-3242836,3244138-3248540,3248928-3249107,
            3249108-3250892,3251055-3252173
          Length = 2727

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 22/92 (23%), Positives = 46/92 (50%)
 Frame = +2

Query: 440  GTAHQITFLSLSRGLGPTYCQLIRYSVLTRVSVMLTIWARIGRVRSLERTLSSVVDLPQF 619
            G + QI  L++ + LGPT   ++   ++ +     T      +  + ER +    +L   
Sbjct: 1858 GISEQIKVLNICKDLGPT--DVVHDEIMLQTMSRETFNHVKHKEETEERNVFMDAELSVL 1915

Query: 620  QDGSIHNEPVLGYRAGSRERQDLIEELKRTAS 715
              G+I  + V+G+RA  ++  +L+EE++  A+
Sbjct: 1916 --GAILAQTVIGFRALHQQNCELVEEVESGAA 1945


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,452,494
Number of Sequences: 37544
Number of extensions: 430726
Number of successful extensions: 925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)