Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_C15
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 73 2e-13
02_01_0158 - 1103461-1104186 73 3e-13
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 31 1.7
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 3.0
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 29 5.2
04_04_1582 - 34590698-34591199,34593849-34594690 29 5.2
07_03_0595 + 19845631-19845972 29 6.9
03_01_0483 + 3689155-3689814 29 6.9
11_06_0416 + 23307984-23308281,23310083-23310900 28 9.1
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 9.1
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 28 9.1
>08_01_0202 - 1638978-1639571
Length = 197
Score = 73.3 bits (172), Expect = 2e-13
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Frame = +3
Query: 249 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 428
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 429 GEKG-FEAAGVTGPGGEPVK-GSPYAADKRRGY 521
G G +A VT PGG + GS + RGY
Sbjct: 59 GNDGRTKAVDVTAPGGGALTGGSRPSGGGDRGY 91
>02_01_0158 - 1103461-1104186
Length = 241
Score = 72.9 bits (171), Expect = 3e-13
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +3
Query: 249 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 428
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 429 GEKG-FEAAGVTGPGGEPVKG 488
E G +A VTGP G VKG
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG 80
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 720 APMNKRKGSAELRSXPIPXRGQGRKKSGSXAQNG 821
A +R GS E R +P RG G GS A+NG
Sbjct: 240 AAARQRLGSWERRRRSLPGRGDGASGGGSAARNG 273
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 399 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 488
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 29.1 bits (62), Expect = 5.2
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Frame = +3
Query: 276 WFNVKSGYGF-INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGE--------AVEFAVVA 428
W NV SG R +E V R +P +A + G E VA
Sbjct: 8 WINVSSGLDSGRQRGRRREGALVAWGGAQRTSPVEAAARMESGGWHRRTSMIVREELEVA 67
Query: 429 GE----KGFEAAGVTGPGGEPVKGSPYAADKRRG 518
G+ G EA G +GPGGE D RRG
Sbjct: 68 GDGRRASGVEAPGGSGPGGERTMAPANIDDSRRG 101
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 393 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 515
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>07_03_0595 + 19845631-19845972
Length = 113
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 615 GWAGVHDVLILLCVELLHRLVRHLDEGNIGGGSHGA 508
G V +V I + + L L+R L+EG+ GGG GA
Sbjct: 48 GGEKVTEVKIRITRKQLEELLRRLEEGSDGGGGGGA 83
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 6.9
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +3
Query: 393 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 518
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
>11_06_0416 + 23307984-23308281,23310083-23310900
Length = 371
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 549 HLDEGNIGGGSHGACLQHKVSLLLAHH 469
HLD+ N+ G +G + K+SLL A H
Sbjct: 89 HLDDPNVDGVRNGVRARFKISLLAAAH 115
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 464 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 336
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.3 bits (60), Expect = 9.1
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +3
Query: 243 VIAEKVSGTVKWFNVKSGYGF--INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEF 416
+++EK GT +V+S + +N N + ED+ HQ A+ + +S G G+ +
Sbjct: 281 MVSEKNGGTD---SVESAFDNENVNSNISHEDMHQHQKVNAKGGRKGRYKSQGRGQIQQN 337
Query: 417 AVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 521
G A + +P+ G P D RG+
Sbjct: 338 TSGQGHVSSPATSGSDHVNKPIPG-PRMPDGTRGF 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,917,035
Number of Sequences: 37544
Number of extensions: 378117
Number of successful extensions: 1326
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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