Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C15
         (920 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    27   0.60 
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          24   5.6  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          24   5.6  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          24   5.6  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          24   5.6  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   9.8  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   9.8  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   9.8  

>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1248

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 669  AVFPSQFSRWTPWGXVLAPMNKRKGSAELRSXPIPXRGQ-GRKKSGSXAQNGXEWEMPXX 845
            A FP+      P   +L+P  +R+   + R+  +P R Q GR  S +        EM   
Sbjct: 1140 APFPATNGMAPPLSPILSPRRRRQAQRQARAHMLPDRQQNGRAVSSAEELERRRREMERT 1199

Query: 846  QHSNQQ 863
            +   Q+
Sbjct: 1200 RRQRQR 1205


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 387 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 473
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 387 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 473
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 387 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 473
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 387 SVGDGEAVEFAVVAGEKGFEAAGVTGPGG 473
           ++GD E    AV   ++GF A+G  G GG
Sbjct: 201 TIGD-EQQSHAVSPNQRGFSASGGGGSGG 228


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 552 RHLDEGNIGGGSHGAC 505
           R  +EG  G GSHG C
Sbjct: 346 RIANEGGTGCGSHGCC 361


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 552 RHLDEGNIGGGSHGAC 505
           R  +EG  G GSHG C
Sbjct: 346 RIANEGGTGCGSHGCC 361


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 775 PGGREGKNQAPXPK 816
           PGG EG+  AP PK
Sbjct: 403 PGGGEGRPGAPGPK 416


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,453
Number of Sequences: 2352
Number of extensions: 12711
Number of successful extensions: 33
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100055142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)