Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C15
         (920 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.73 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 DGEAVEFAVVAGEKGFEAAGVTGPGGEPV 482
           DG+ V    VA E GF+  G   P   P+
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPI 109


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 43  DLNCWTCYDEKR*TSRRGRG 102
           D N W C D+K      GRG
Sbjct: 62  DENYWQCNDKKTDIEETGRG 81



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 126 MVAKMVKYSTTSPRCSPLFVVTSPT 52
           ++ + V    TS  C P  V+ SPT
Sbjct: 258 LLERSVDLVVTSTYCEPQVVIVSPT 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,789
Number of Sequences: 438
Number of extensions: 3654
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)