Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C14
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   257   9e-69
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   254   7e-68
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   2.0  
AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   4.7  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  257 bits (629), Expect = 9e-69
 Identities = 120/145 (82%), Positives = 132/145 (91%)
 Frame = +1

Query: 145 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 324
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 325 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 504
           IAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134

Query: 505 LDFYVVLGRPGFNVAHRRRKTGKVG 579
           +DFYVVL R G  +A RRR  G+VG
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVG 159



 Score = 37.1 bits (82), Expect = 0.018
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +3

Query: 576 GIPHRLTKEDAMKWFQQKYDG 638
           G  HR+ +E+++KWFQQKYDG
Sbjct: 159 GPSHRVEREESIKWFQQKYDG 179


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  254 bits (622), Expect = 7e-68
 Identities = 118/144 (81%), Positives = 130/144 (90%)
 Frame = +1

Query: 148 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 327
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 328 AVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 507
           AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76  AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135

Query: 508 DFYVVLGRPGFNVAHRRRKTGKVG 579
           DFYVVL R G  V+ RRR  G++G
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIG 159



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +3

Query: 576 GIPHRLTKEDAMKWFQQKYDG 638
           G  HR+ KE+ +KWFQQKYDG
Sbjct: 159 GPSHRVDKEETIKWFQQKYDG 179


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 340 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 498
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical
           protein C16C4.6 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 647 KYDTIIFLLEPLHSIFLCEAV-GNPTFPVLRLLCATLK 537
           K DT +F     HS+F+   V  +P+FPVLRL    L+
Sbjct: 36  KIDTRLFQSVSRHSLFIIPPVMSSPSFPVLRLPSKALR 73


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 441  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 304
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 402 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 313
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,336
Number of Sequences: 27780
Number of extensions: 332358
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)