Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_C13
(1064 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 39 0.001
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.16
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.21
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.32
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.48
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.84
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/73 (30%), Positives = 22/73 (30%)
Frame = +3
Query: 609 PPPPPXXXXXGXFFXXXXXPPPPPPXXXXXPPPPPPXXXAXXXXXXXXXPXXGGGGGGXX 788
PPPPP PPP P PPPPPP A P GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 789 XPXPXXXAXXXXK 827
P A K
Sbjct: 792 YYAPAPQAEPEPK 804
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 422 PPPPPXXXPPPPXXXXXPXXGXXPPP 499
PPP P PPP G PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 422 PPPPPXXXPPPPXXXXXPXXGXXPPP 499
PPPPP PPP P PPP
Sbjct: 761 PPPPP---PPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.16
Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = +1
Query: 667 PPPPPPPXXXPPPP--PXXXXXPP 732
P PPPPP PPPP P PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 31.9 bits (69), Expect = 0.16
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 422 PPPPPXXXPPPPXXXXXPXXGXXPPP 499
PPPPP PPPP P PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Frame = +1
Query: 667 PPPP---PPPXXXPPPPPXXXXXPP 732
PPPP PPP PP P PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 666 PPPPPPXXXXXPPPPPPXXXA 728
P PPPP PPP P A
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPA 1725
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.21
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Frame = +1
Query: 667 PPPPPPPXXXPP--PPP 711
PPPPPPP PP PPP
Sbjct: 10 PPPPPPPGFEPPSQPPP 26
Score = 30.7 bits (66), Expect = 0.36
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 667 PPPPPPPXXXPPPPPXXXXXPP 732
PPPPPPP PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = +3
Query: 666 PPPPPPXXXXXPP--PPPP 716
PPPPPP PP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = +3
Query: 666 PPPPPPXXXXXP--PPPPP 716
PPPPPP P PPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = +3
Query: 666 PPPPPPXXXXX--PPPPPP 716
PPPPPP PPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 422 PPPPPXXXPPPPXXXXXPXXGXXPPPG 502
PP P PPPP PPPG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 27.1 bits (57), Expect = 4.5
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 609 PPPPPXXXXXGXFFXXXXXPPPPPP 683
PPPPP F PPPPPP
Sbjct: 9 PPPPPPPPG----FEPPSQPPPPPP 29
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 425 PPPPXXXPPPPXXXXXPXXGXXPPPGG 505
PP PPPP P PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 428 PPPXXXPPPPXXXXXPXXGXXPPPGGG 508
PP PPPP P PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 682 PPXXXPPPPPXXXXXPP 732
PP PPPPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect(2) = 0.32
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Frame = +1
Query: 607 PPP---PPXXXKXXXFFXLXXXXPPPPPPP 687
PPP PP PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Score = 25.4 bits (53), Expect(2) = 0.32
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 670 PPPPPPXXXPP 702
PPPPPP PP
Sbjct: 238 PPPPPPPTLPP 248
Score = 23.8 bits (49), Expect(2) = 0.32
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 667 PPPPPPP 687
PPPPPPP
Sbjct: 191 PPPPPPP 197
Score = 23.8 bits (49), Expect(2) = 0.32
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 667 PPPPPPPXXXPPP 705
P PPPPP PP
Sbjct: 236 PAPPPPPPPTLPP 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.48
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 609 PPPPPXXXXXGXFFXXXXXPPPPPPXXXXXPPPPPP 716
PPPPP G P PP PPPPPP
Sbjct: 339 PPPPPRSNAAGSI--------PLPPQGRSAPPPPPP 366
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Frame = +1
Query: 607 PPPPPXXXKXXXFFXL--XXXXPPPPPPPXXXP----PPPP 711
PPPPP L PPPPPP P PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 425 PPPPXXXPPPPXXXXXPXXGXXPPP 499
PP PPPP P G PPP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 4.5
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Frame = +1
Query: 607 PPPPPXXXKXXXFFXLXXXX-----PPPPPPPXXXP----PPPPXXXXXPP 732
PPPPP + + PPPPPPP P PP PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +1
Query: 607 PPPPPXXXKXXXFFXLXXXXPPPPPPPXXXPPPPPXXXXXP 729
P PP L P PP P P PPP P
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.84
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = -1
Query: 731 GGXXXXXGGGGGXXXGGGGGGGXXXXXKKXXXXXXXXGGGGGXXXF 594
GG GG GG G GG GG + G GGG F
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = -1
Query: 800 GXGXXXPPPPPPXXXXXXXXXXXGGXXXXXGG-GGGXXXGGGGGGGXXXXXKKXXXXXXX 624
G G PPP P G GG GGG GG GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
Query: 623 XGGGGG 606
GGG G
Sbjct: 254 FGGGPG 259
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = -3
Query: 711 GGGGGXXXXXGGGGGGXXXXXKKXXXFXXXGGGG 610
G GG GGG GG F GG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217
Score = 23.4 bits (48), Expect(2) = 1.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 498 GGGXXPXXGXXXXXGGGGXXXGGGGG 421
GGG G GGG GGG G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPG 266
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 670 PPPPPPXXXPPPPPXXXXXPP 732
PP PPP PP P PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPP 1209
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 670 PPPPPPXXXPPPPPXXXXXPP 732
PP PPP PP P PP
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPP 1228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,389
Number of Sequences: 5004
Number of extensions: 50354
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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