Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C13
         (1064 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.16 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   8.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.16
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 422 PPPPPXXXPPPPXXXXXPXXGXXPPPGG 505
           P P P   P  P     P     PPPGG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGG 50


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 667  PPPPPPP 687
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 667  PPPPPPP 687
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.6 bits (46), Expect = 6.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 781  PPPPPPXXG 755
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 21.0 bits (42), Expect(2) = 2.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 666  PPPPPP 683
            PPPPPP
Sbjct: 1355 PPPPPP 1360



 Score = 21.0 bits (42), Expect(2) = 2.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 699  PPPPPP 716
            PPPPPP
Sbjct: 1356 PPPPPP 1361


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 682 PPXXXPPPPPXXXXXP 729
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 6.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 670 PPPPPPXXXPPPPP 711
           PP P P   PPPPP
Sbjct: 338 PPKPAP---PPPPP 348



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 425 PPPPXXXPPPP 457
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 667 PPPPPPPXXXP 699
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 903  PXSXXXXXPPPPPXXXNKN 959
            P S     PPPPP   ++N
Sbjct: 1852 PVSGSPEPPPPPPRNHDQN 1870



 Score = 22.2 bits (45), Expect = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 794  GXXXPPPPPP 765
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,413
Number of Sequences: 438
Number of extensions: 14178
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35547795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)