Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C11
         (937 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537685-1|CAD97811.1|  520|Homo sapiens hypothetical protein pr...    31   8.0  
BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        31   8.0  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        31   8.0  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       31   8.0  

>BX537685-1|CAD97811.1|  520|Homo sapiens hypothetical protein
           protein.
          Length = 520

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +3

Query: 567 RRSSQRWXNPXRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGAFLIAHAV 737
           RR  ++W    R ++IP VSP  L  A   S P  + +P RL P G++     A A+
Sbjct: 13  RRDLKKWDVQKRRLEIPAVSPSTL-YATEVS-PCPWFLPGRLLPLGEKNYTTAAAAM 67


>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 696 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCXGXATSDLS 571
           EKG +VSGKR+GRN  A   ++      +  +C   A +  S
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 696 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCXGXATSDLS 571
           EKG +VSGKR+GRN  A   ++      +  +C   A +  S
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 8.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 696 EKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SCXGXATSDLS 571
           EKG +VSGKR+GRN  A   ++      +  +C   A +  S
Sbjct: 3   EKGPEVSGKRRGRNNAAASASAAAASAAASAACASPAATAAS 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,573,275
Number of Sequences: 237096
Number of extensions: 2435488
Number of successful extensions: 6995
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6995
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12270013262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)