Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C11
         (937 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    28   8.3  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 605 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRF 718
           Y+  R+F +E    ALL +   +P+TC   +  E W F
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIF 108


>Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical
           protein T05E11.8 protein.
          Length = 202

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 720 GKRHASRRE-KGGQVSGKRQGRNRRA-HEGASRGKR 619
           G RH  R+  KGG+  GK+ G  +R  H G   GK+
Sbjct: 161 GGRHGGRKGGKGGKHFGKKNGDKKRGPHGGDEEGKK 196


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 528 FHRLRPPDEHHKNRRSSQRWXNPXRTIKIPGVSPWKLPRALSCSDPA 668
           F+ + PP+ H++ R  +Q + +     +     PW  PR  + +DPA
Sbjct: 7   FNPISPPNNHYRPRSPTQSYSSNATNYE----QPWNSPRFRAPADPA 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,029
Number of Sequences: 27780
Number of extensions: 350644
Number of successful extensions: 888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)