Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C09
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual      133   3e-32
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          66   9e-12
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    28   1.6  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    28   1.6  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   6.5  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    26   8.6  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   8.6  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  133 bits (322), Expect = 3e-32
 Identities = 79/185 (42%), Positives = 102/185 (55%), Gaps = 4/185 (2%)
 Frame = +2

Query: 212 KLIPELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMIANDLFVQTIXXXXXXX 391
           +LI E+C   Y  GWVTGTG        D I IAPSGVQKERM  + LFV ++       
Sbjct: 22  ELICEICRDLYTSGWVTGTG--------DAIVIAPSGVQKERMELHHLFVMSLITREYMR 73

Query: 392 XXXXXXXXXSQCTPLFMLAYR-MRNAGAVIHTHSPHAVRCTLLY--DKVFEITHQEMIKG 562
                    SQCTPLF+  Y  +R+A A IHTHS  A+  + L+     F  T  E++  
Sbjct: 74  MPALRLKP-SQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLFADSDHFSATGFEVLSY 132

Query: 563 I-KDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGD 739
           I K +    + +  +K+ +P I NT  E DL  SL+EA+  YP T AV+VR HG+Y WGD
Sbjct: 133 IPKGSKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVRDHGIYCWGD 192

Query: 740 TWTXT 754
           TW  T
Sbjct: 193 TWQDT 197


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 65.7 bits (153), Expect = 9e-12
 Identities = 58/181 (32%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
 Frame = +2

Query: 209 RKLIPELCNQFYHLGWVT-GTGGGISIKQGDKIYIAPSGVQKERMIANDLFVQTIXXXXX 385
           + LI EL   FY LGW+  G+G  I +K  D+       VQ++ +  ND+    +     
Sbjct: 7   KNLILELIPHFYSLGWMKFGSGYAICVK--DR-------VQRDFITENDIVTFNLSNQSV 57

Query: 386 XXXXXXXXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYDKVFEITHQEMIKGI 565
                           +F       +A A I++ S  AV  ++ Y++ F    +EMIKGI
Sbjct: 58  TKDLVNWAY-------IFSWVLSNMDAVACIYSTSVAAVGASM-YNEKFTTQSKEMIKGI 109

Query: 566 -KDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDT 742
            K      YL   + L VPII N    K +   L++ ++ YP T AVL+R HGV  WG T
Sbjct: 110 PKGNPSAGYLCCFDTLEVPIIHNGD-SKTILDELKKVIELYPQTCAVLIRGHGVIGWGAT 168

Query: 743 W 745
           W
Sbjct: 169 W 169


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +2

Query: 518 YDKVFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGT 694
           YD + E+    +I  +++    R + Y +K +  +I N P + D A +L  A+ EY  T
Sbjct: 535 YDDIIEL--DPLIGSLENAR--RIVNYFKKNIPELIPNDPSDDDYAAALNYAVNEYVPT 589


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 413 STFFPVVVILNLHH-QLFGQTDHWLSCVPSELLKVQCKFCLLV 288
           + F  V++ +NL H + FG+ + WLS V   +L      C+++
Sbjct: 164 AVFLVVILAINLLHVKYFGEVEFWLSAVKILVLVTLIITCIVI 206


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 497 AVRCTLLYDKVFEITHQEMIKGIKDTSLGRYLR 595
           AVRC     K     H+E IKG+K+  L   LR
Sbjct: 193 AVRCIRFATKYDFNIHEETIKGLKNPELHERLR 225


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 80  QT*L*LRGYKYNKFNFILMK 139
           QT L   GY Y KFN++ MK
Sbjct: 447 QTNLAFLGYTYKKFNYLTMK 466


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 407 FFPVVVILNLHHQLFGQTDHWLSC 336
           + P++V+ N H   F +TDH + C
Sbjct: 39  YVPLIVMKNAHDHGFLRTDHTIPC 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,293
Number of Sequences: 5004
Number of extensions: 55118
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)