Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C09
         (915 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...   170   2e-42
04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271           30   2.2  
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    29   5.2  
06_02_0338 - 14723277-14723444,14724564-14724836,14735044-147351...    28   9.0  

>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score =  170 bits (413), Expect = 2e-42
 Identities = 92/193 (47%), Positives = 115/193 (59%), Gaps = 14/193 (7%)
 Frame = +2

Query: 209 RKLIPELCNQFYHLGWVTGTGGGISIKQGDK--------IYIAPSGVQKERMIANDLFVQ 364
           R+L+ ELC  FY  GWVTGTGG I++K  D         I ++PSGVQKERM+A D++V 
Sbjct: 30  RELVAELCRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVL 89

Query: 365 T----IXXXXXXXXXXXXXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYD--K 526
           +    +                + C PLFM AY MR AGAVIH+H       T+L    K
Sbjct: 90  SADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAK 149

Query: 527 VFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVL 706
            F +TH EMIKGIK         Y ++LVVPIIENTP+E +L  SL EA+  YP  +AVL
Sbjct: 150 EFRMTHMEMIKGIKGHG------YRDELVVPIIENTPYEYELTDSLAEAIAAYPKATAVL 203

Query: 707 VRRHGVYVWGDTW 745
           VR HG+YVWGD+W
Sbjct: 204 VRNHGIYVWGDSW 216


>04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271
          Length = 375

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 389 ILNLHHQLFGQTDHWLSCVPSELLKVQCKFCLLVLLIYHHPCQSPIL 249
           + NL + LF      L   PS L  ++C    ++L  Y+ PC  P L
Sbjct: 192 VKNLGNTLFELLSEGLGLKPSYLTDIECNQGQIILCHYYPPCPQPEL 238


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 626 ENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDTW 745
           ENT  +  L+    E LKE  G S  L+  +G+Y +   W
Sbjct: 286 ENTRRKSMLSSKWSELLKEDSGHSRFLLSTYGLYAYDTVW 325


>06_02_0338 -
           14723277-14723444,14724564-14724836,14735044-14735160,
           14735276-14735593
          Length = 291

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -1

Query: 738 SPHTYTPCLLTSTALVPGYSFKASSRLPARSFSKGVFSIIGTTNFSS*RRYRPRDVSL 565
           +P + +    T+T  V G + +   R+  +   +G   + GTT+    RR  P+D +L
Sbjct: 47  APASSSDAKKTTTVFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQDPNL 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,800
Number of Sequences: 37544
Number of extensions: 339909
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)