Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C09
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical pr...   146   1e-35

>Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical
           protein ZC373.5 protein.
          Length = 263

 Score =  146 bits (355), Expect = 1e-35
 Identities = 75/178 (42%), Positives = 99/178 (55%), Gaps = 1/178 (0%)
 Frame = +2

Query: 224 ELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMIANDLFVQTIXXXXXXXXXXX 403
           EL  QFY LGW+ G+GG +    G ++ I+PS +QKER+   D+FV  +           
Sbjct: 35  ELMIQFYKLGWMRGSGGAMGCISGSELMISPSALQKERIREQDVFVYNMKDKTEVQRPPN 94

Query: 404 XXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCT-LLYDKVFEITHQEMIKGIKDTSL 580
                S C+ LF L  +   +  VIHTHS  A   T L+   VFEI+HQE IKGI D   
Sbjct: 95  KRITVSSCSVLFSLIMKETGSECVIHTHSKCANLITQLIKSNVFEISHQEYIKGIYDPFS 154

Query: 581 GRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDTWTXT 754
           G+ L+Y + L +PII+N P E  L   +   L+ YP   AVLVR HG++VWG TW  T
Sbjct: 155 GKALKYSDTLTIPIIDNMPSESQLLEPIRGVLENYPQAIAVLVRNHGLFVWGPTWEST 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,206
Number of Sequences: 27780
Number of extensions: 308832
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)