Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C08
         (1004 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.001
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.45 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.90 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect(2) = 0.001
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 902 PPPPPPXXGGGXXXXPPPP 958
           PPPPPP   G     PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 903 PPPPPPXXXGGXXXXPPPP 959
           PPPPPP    G    PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect(2) = 0.037
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 902  PPPPPPXXGGGXXXXPPPPXXXXXXXXXXXXPPP 1003
            PPPPP   G G    PPPP            P P
Sbjct: 764  PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 31.1 bits (67), Expect = 0.26
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +3

Query: 903  PPPPPPXXXGGXXXXPPPPXXXXXXXXXXXXPPP 1004
            P PPP    GG    PPPP            PPP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +2

Query: 905  PPPPPXXGGGXXXXPPPPXXXXXXXXXXXXPPP 1003
            PPP P  GG     PPPP            PPP
Sbjct: 752  PPPAPIMGG---PPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 691 PPPPPXXGGGGXFFXXPPP 635
           PPPPP   G G     PPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 7.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 691 PPPPPXXGGGGXFFXXPPP 635
           PPPPP    GG  +  P P
Sbjct: 779 PPPPPAVSAGGSRYYAPAP 797



 Score = 25.4 bits (53), Expect(2) = 0.001
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 746 PPPXXFFSXPPPPP 787
           PPP      PPPPP
Sbjct: 752 PPPAPIMGGPPPPP 765



 Score = 21.0 bits (42), Expect(2) = 0.037
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +2

Query: 746 PPPXXFFSXPPPPP 787
           PP       PPPPP
Sbjct: 753 PPAPIMGGPPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 902 PPPPPPXXGGGXXXXPPPP 958
           PPPPPP  G      PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 903 PPPPPPXXXGGXXXXPPPP 959
           PPPPPP         PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 27.9 bits (59), Expect = 2.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 903 PPPPPPXXXGGXXXXPPPP 959
           PPPPPP         PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect(2) = 0.90
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +2

Query: 905  PPPPPXXGGGXXXXPPPPXXXXXXXXXXXXPPP 1003
            PPPPP          PPP            PPP
Sbjct: 361  PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 26.2 bits (55), Expect(2) = 1.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 902 PPPPPPXXGGGXXXXPPP 955
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378



 Score = 25.8 bits (54), Expect = 9.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 902 PPPPPPXXGGGXXXXPPPP 958
           PPPPPP         P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355



 Score = 21.0 bits (42), Expect(2) = 0.90
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 749 PPXXFFSXPPPPP 787
           PP    + PPPPP
Sbjct: 354 PPQGRSAPPPPPP 366



 Score = 20.6 bits (41), Expect(2) = 1.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 746 PPPXXFFSXPPPPP 787
           P P    S PPPPP
Sbjct: 352 PLPPQGRSAPPPPP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,339
Number of Sequences: 5004
Number of extensions: 32255
Number of successful extensions: 294
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 521265546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)