Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C06
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   221   1e-58
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   217   2e-57
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    29   1.2  
SPCC569.08c |ade5|ade8|phosphoribosylglycinamide formyltransfera...    27   3.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   8.2  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  221 bits (539), Expect = 1e-58
 Identities = 109/157 (69%), Positives = 122/157 (77%)
 Frame = +3

Query: 315 LFVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 494
           L ++G+ I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAPSK 126

Query: 495 DAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 674
           DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM           
Sbjct: 127 DAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186

Query: 675 XXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPA 785
             DGPS K WR GRGA  NIIP+STGAAKAVGKVIPA
Sbjct: 187 TVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPA 223



 Score =   99 bits (238), Expect = 4e-22
 Identities = 47/64 (73%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
 Frame = +2

Query: 131 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 307
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 308 GFLV 319
           G LV
Sbjct: 65  GKLV 68



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 787 LNGKLTGMAFRVPVANVS 840
           LNGKLTGMAFRVP  +VS
Sbjct: 224 LNGKLTGMAFRVPTPDVS 241


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  217 bits (530), Expect = 2e-57
 Identities = 107/157 (68%), Positives = 121/157 (77%)
 Frame = +3

Query: 315 LFVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAPSA 494
           L ++GN I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAPS 
Sbjct: 67  LVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSK 126

Query: 495 DAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXX 674
           DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM           
Sbjct: 127 DAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQK 186

Query: 675 XXDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPA 785
             DGPS K WR GRGA  NIIP+STGAAKAVGKVIPA
Sbjct: 187 TVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPA 223



 Score =  102 bits (245), Expect = 6e-23
 Identities = 48/64 (75%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
 Frame = +2

Query: 131 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 307
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 308 GFLV 319
           G LV
Sbjct: 65  GKLV 68



 Score = 34.3 bits (75), Expect = 0.023
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +1

Query: 787 LNGKLTGMAFRVPVANVS 840
           LNGKLTGMAFRVP  +VS
Sbjct: 224 LNGKLTGMAFRVPTPDVS 241


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -3

Query: 529 SRLTPTTNMGASALGADIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLS 350
           S+L+PT     + L A  ++     S          ++ +DS+TY     P   ++ SLS
Sbjct: 174 SQLSPTHTSTIAELAASTLSIFPSGSYAGSTFGSPSRSSIDSSTY----LPRSKSVNSLS 229

Query: 349 EKTAILLPLTNKESI 305
              +   P +N+ S+
Sbjct: 230 SNFSARTPASNQSSV 244


>SPCC569.08c |ade5|ade8|phosphoribosylglycinamide
           formyltransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 207

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 337 ILLPL-TNKESILNLNTALKTAMGGI 263
           +L+PL TNK  I+NL+ AL  A  GI
Sbjct: 107 VLIPLETNKIGIINLHPALPGAFNGI 132


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 87  SVIQQIFYNLPRTCQKLESMDL 152
           +++QQI +NL R CQ + + D+
Sbjct: 245 NILQQIRFNLERICQDIGNFDV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,528
Number of Sequences: 5004
Number of extensions: 80339
Number of successful extensions: 244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)