Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C04
         (982 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   2.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   6.3  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   6.3  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   6.3  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   6.3  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   6.3  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   6.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.3  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   6.3  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   6.3  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   6.3  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 821 PPPPPKKXXPXGPPPXXPPPXXPPXXXPPG 910
           PPPPP++      P   P         PPG
Sbjct: 214 PPPPPEEDDDSNIPQNNPKNKQHNFNLPPG 243


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 76  GAPPRSTPPLSTP 88


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +1

Query: 559  PPPPXXGGGGGXXXPPPPXGGXXXPP 636
            PPP    G G      PP  G    P
Sbjct: 1112 PPPSGSSGPGSTGSKSPPVAGFEESP 1137


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 853 GAPPXXTPPXXPP 891
           GAPP  TPP   P
Sbjct: 120 GAPPRSTPPLSTP 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.154    0.549 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,160
Number of Sequences: 336
Number of extensions: 3307
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27823477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)