Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C04
         (982 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.20 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 824 PPPPKKXXPXGPPPXXPPPXXP 889
           PP P +  P G PP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
 Frame = +2

Query: 824 PPPPKKXXPXGP---PPXXPPPXXPPXXXP 904
           P  P++  P  P   PP   PP  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 800 PPXXGGXPPPPPKKXXPXGPPPXXPPPXXPP 892
           PP  G   PP P      G PP    P   P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440



 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 332 RGXPPPXXXXPPXXTPPKXP 391
           RG PP     PP   PP  P
Sbjct: 36  RGSPPNPSQGPPPGGPPGAP 55



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 329 PRGXPPPXXXXPPXXTPPKXPXPPPXGG 412
           P+  P      P   +PP     PP GG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGG 50


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 909 PGGXXXGGXXGGGXXGGGPXGXFFXGGGGG 820
           PG    GG   G   G    G    GGGGG
Sbjct: 22  PGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 590 PPPPPXXGG 564
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -3

Query: 497  GGGGGVFXXGEXXPPPPPP 441
            G    +   G   PPPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPPP 1864



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 610  PXGGXXXPPPPP 645
            P  G   PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 458 PPPPPPXXXG 429
           PPPPPP   G
Sbjct: 343 PPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 458  PPPPPPXXXG 429
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.154    0.549 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,481
Number of Sequences: 438
Number of extensions: 7326
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)