Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C03
         (930 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    32   0.67 
Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical pr...    29   6.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    25   8.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    25   8.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    25   8.6  

>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical protein
            T16G12.5 protein.
          Length = 1142

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 171  PKEDNSLNTLAESAKKTIEELREKVESALAP----ETVKKNFGTMVDSFNEFYKNLKPAE 338
            P ED S N   + AKK + +L+  V    AP     T ++ +   VD  NE+ + L   E
Sbjct: 834  PSEDVSFNLAVDEAKKLLRDLKIDVNQVNAPTLPQRTDRQRYNQQVDVCNEWIEELHDDE 893


>Z67995-6|CAA91946.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 177 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 347
           E++S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


>Z67737-7|CAA91543.1| 2692|Caenorhabditis elegans Hypothetical
           protein T01H10.8 protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 177 EDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNLKPAEAPK 347
           E++S   L    K TI   +      L  +  K  FG ++D FN  + NL+ ++  K
Sbjct: 125 EEDSQILLLRLLKTTISS-KSNYHHRLVLDECKVGFGMLIDDFNNGFNNLEKSDVRK 180


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 25.0 bits (52), Expect(2) = 8.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 571 PPPXGXPPPXP 539
           PPP G PPP P
Sbjct: 763 PPPGGCPPPPP 773



 Score = 21.4 bits (43), Expect(2) = 8.4
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = -3

Query: 622 GXXPXPPXXXXXXXXXXPPPXGXPPP 545
           G  P PP           PP   PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPP 765


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 25.0 bits (52), Expect(2) = 8.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 571 PPPXGXPPPXP 539
           PPP G PPP P
Sbjct: 763 PPPGGCPPPPP 773



 Score = 21.4 bits (43), Expect(2) = 8.4
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = -3

Query: 622 GXXPXPPXXXXXXXXXXPPPXGXPPP 545
           G  P PP           PP   PPP
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPP 765


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 25.0 bits (52), Expect(2) = 8.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 571 PPPXGXPPPXP 539
           PPP G PPP P
Sbjct: 346 PPPGGCPPPPP 356



 Score = 21.4 bits (43), Expect(2) = 8.6
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = -3

Query: 622 GXXPXPPXXXXXXXXXXPPPXGXPPP 545
           G  P PP           PP   PPP
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPP 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,023
Number of Sequences: 27780
Number of extensions: 220187
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)