Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C02
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0382 - 22501041-22501279,22501717-22501810                       31   1.5  
01_03_0005 + 11568545-11569119,11569179-11569191                       24   4.4  
07_01_0541 - 3990585-3990687,3991684-3992297                           29   5.9  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   7.8  
04_04_0009 + 22134160-22134696                                         25   9.7  

>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 609 PPXPXXGGGGGXXPPPP 659
           PP P  GGGGG   PPP
Sbjct: 84  PPSPYYGGGGGYGKPPP 100


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 24.2 bits (50), Expect(2) = 4.4
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +3

Query: 501 PPPPXXXXXXXGGGGXXKKXXFFXKKKXXXFFXXXXPPXPXXGGGGG 641
           PPPP       GGGG                     PP P  GGGGG
Sbjct: 70  PPPPSYPSGGGGGGGGGT-------------VMYTSPPPPYSGGGGG 103



 Score = 23.4 bits (48), Expect(2) = 4.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 627 GGGGGXXPPPP 659
           GGGGG  P PP
Sbjct: 131 GGGGGAYPTPP 141


>07_01_0541 - 3990585-3990687,3991684-3992297
          Length = 238

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 628 GGGGGXXPPPPXXP 669
           GGGGG  PPPP  P
Sbjct: 113 GGGGGEMPPPPSSP 126


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 609 PPXPXXGGGGGXXPPPP 659
           PP P   G GG  PPPP
Sbjct: 371 PPPPGAAGRGGGGPPPP 387


>04_04_0009 + 22134160-22134696
          Length = 178

 Score = 24.6 bits (51), Expect(2) = 9.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 659 GGGGXXPPPPP 627
           GGG   PPPPP
Sbjct: 58  GGGSTAPPPPP 68



 Score = 21.8 bits (44), Expect(2) = 9.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 545 PPPPXXXXXXXGGGXG 498
           PPPP       GGG G
Sbjct: 65  PPPPPSSSGKSGGGGG 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,569
Number of Sequences: 37544
Number of extensions: 391109
Number of successful extensions: 1941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)