Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_C02
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AL117203-5|CAB55107.1|  291|Caenorhabditis elegans Hypothetical ...    29   5.3  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 25.4 bits (53), Expect(2) = 4.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 668 GXXGGGGXXPPPPPXXXXXG 609
           G   GGG  PPPPP     G
Sbjct: 45  GGGCGGGCAPPPPPPACGGG 64



 Score = 25.4 bits (53), Expect(2) = 4.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 668 GXXGGGGXXPPPPPXXXXXG 609
           G   GGG  PPPPP     G
Sbjct: 102 GGGCGGGCAPPPPPPACGGG 121



 Score = 21.8 bits (44), Expect(2) = 4.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 545 PPPPXXXXXXXGGGXG 498
           PPPP       GGG G
Sbjct: 56  PPPPACGGGCGGGGGG 71



 Score = 21.8 bits (44), Expect(2) = 4.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 545 PPPPXXXXXXXGGGXG 498
           PPPP       GGG G
Sbjct: 113 PPPPACGGGCGGGGGG 128


>AL117203-5|CAB55107.1|  291|Caenorhabditis elegans Hypothetical
           protein Y48C3A.8 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 618 PXXGGGGGXXPPPP 659
           P  GGGGG  PPPP
Sbjct: 157 PTGGGGGGSVPPPP 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,270,347
Number of Sequences: 27780
Number of extensions: 197460
Number of successful extensions: 1027
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)