Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP06_F_C01
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 391 e-109
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 391 e-109
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 246 7e-87
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 305 3e-83
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 223 2e-58
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 223 2e-58
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 190 9e-49
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 4e-33
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 93 3e-19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 93 3e-19
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 91 1e-18
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 91 1e-18
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 91 1e-18
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 60 3e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 3e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 45 7e-06
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 45 6e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 39 0.006
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 39 0.006
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.12
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.12
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.16
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 33 0.21
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.21
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.48
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 3.4
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 3.4
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 4.5
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 4.5
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 6.0
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 391 bits (963), Expect = e-109
Identities = 190/249 (76%), Positives = 206/249 (82%), Gaps = 2/249 (0%)
Frame = +1
Query: 115 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 294
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 295 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 474
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 475 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLRKSRRKYPHTSRR 654
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE R + + ++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 655 LA-TXSCCRFVPISGWHGDNMLEPSTKMPWFKGWQVXRKKAX*R-KCLIEALDAILATGR 828
+ FVPISG++GDNMLE S+ MPWFKGW V RK+ K L+EALD+I+ R
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240
Query: 829 PLTXPXVXP 855
P P P
Sbjct: 241 PTDRPLRLP 249
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 828 PTDXPLXXPXKX-FQIGGFGTVP 893
PTD PL P + ++IGG GTVP
Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVP 263
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 391 bits (963), Expect = e-109
Identities = 190/249 (76%), Positives = 206/249 (82%), Gaps = 2/249 (0%)
Frame = +1
Query: 115 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 294
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 295 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 474
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 475 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLRKSRRKYPHTSRR 654
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE R + + ++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 655 LA-TXSCCRFVPISGWHGDNMLEPSTKMPWFKGWQVXRKKAX*R-KCLIEALDAILATGR 828
+ FVPISG++GDNMLE S+ MPWFKGW V RK+ K L+EALD+I+ R
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240
Query: 829 PLTXPXVXP 855
P P P
Sbjct: 241 PTDRPLRLP 249
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 828 PTDXPLXXPXKX-FQIGGFGTVP 893
PTD PL P + ++IGG GTVP
Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVP 263
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 246 bits (602), Expect(2) = 7e-87
Identities = 113/117 (96%), Positives = 116/117 (99%)
Frame = +1
Query: 115 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 294
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 295 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 465
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 93.5 bits (222), Expect(2) = 7e-87
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Frame = +1
Query: 556 LIVGVNKMDSTEPPYSEPRLRKSRRKYPHTSRRLA-TXSCCRFVPISGWHGDNMLEPSTK 732
L+V NKMDSTEPP+SE R + + +++ FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 733 MPWFKGWQVXRKKAX*R-KCLIEALDAILATGRPLTXPXVXP 855
MPWFKGW V RK+ K L+EALD+I+ RP P P
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLP 215
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 828 PTDXPLXXPXKX-FQIGGFGTVP 893
PTD PL P + ++IGG GTVP
Sbjct: 207 PTDRPLRLPLQDVYKIGGIGTVP 229
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 305 bits (748), Expect = 3e-83
Identities = 150/187 (80%), Positives = 159/187 (85%)
Frame = +1
Query: 115 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 294
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 295 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 474
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 475 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLRKSRRKYPHTSRR 654
GEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R +R + +
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQRLFHLSQSP 177
Query: 655 LATXSCC 675
+T + C
Sbjct: 178 DSTETTC 184
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +2
Query: 695 DGTETTCWSLQPKCLGSRDGRWXVRKQ 775
D TETTC C GSRDG RK+
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKE 204
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 223 bits (544), Expect = 2e-58
Identities = 113/240 (47%), Positives = 156/240 (65%)
Frame = +1
Query: 124 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 303
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 304 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 483
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 484 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLRKSRRKYPHTSRRLAT 663
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ R + + R A
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 344
Query: 664 XSCCRFVPISGWHGDNMLEPSTKMPWFKGWQVXRKKAX*RKCLIEALDAILATGRPLTXP 843
S +FVP+SG+ G+N+++ ++ W+ G CL+E +D+ +A P P
Sbjct: 345 FSKPKFVPVSGFTGENLIK-RMELDWYDG-----------PCLLELIDSFVAPQPPSDGP 392
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 223 bits (544), Expect = 2e-58
Identities = 113/240 (47%), Positives = 156/240 (65%)
Frame = +1
Query: 124 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 303
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 304 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 483
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 484 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLRKSRRKYPHTSRRLAT 663
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ R + + R A
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 362
Query: 664 XSCCRFVPISGWHGDNMLEPSTKMPWFKGWQVXRKKAX*RKCLIEALDAILATGRPLTXP 843
S +FVP+SG+ G+N+++ ++ W+ G CL+E +D+ +A P P
Sbjct: 363 FSKPKFVPVSGFTGENLIK-RMELDWYDG-----------PCLLELIDSFVAPQPPSDGP 410
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 190 bits (464), Expect = 9e-49
Identities = 94/215 (43%), Positives = 135/215 (62%), Gaps = 4/215 (1%)
Frame = +1
Query: 118 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 297
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 298 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 477
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 478 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLRKSRRKYPHTSRRL 657
EFE G + GQTREH++L T GVK L++ VNKMD + E R ++ K R+L
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKL 283
Query: 658 A--TXSCCRFVPISGWHGDNMLEPST--KMPWFKG 750
+ +VP SG G + + T + W+ G
Sbjct: 284 GFNPKTDITYVPCSGLTGAFIKDRPTGSEGNWYSG 318
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 4e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 115 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 294
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 295 DKLKAER 315
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 92.7 bits (220), Expect = 3e-19
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +1
Query: 127 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 300
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 301 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 480
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 481 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 591
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 92.7 bits (220), Expect = 3e-19
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +1
Query: 127 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 300
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 301 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 480
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 481 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 591
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 90.6 bits (215), Expect = 1e-18
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 2/166 (1%)
Frame = +1
Query: 121 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 300
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 301 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 480
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 481 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPR 612
QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR 186
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 90.6 bits (215), Expect = 1e-18
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 2/166 (1%)
Frame = +1
Query: 121 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 300
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 301 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 480
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 481 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPR 612
QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR 187
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 90.6 bits (215), Expect = 1e-18
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 2/166 (1%)
Frame = +1
Query: 121 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 300
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 301 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 480
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 481 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPR 612
QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR 187
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 59.7 bits (138), Expect = 3e-09
Identities = 47/148 (31%), Positives = 67/148 (45%)
Frame = +1
Query: 139 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 318
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 319 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 498
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 499 KNGQTREHALLAFTLGVKQLIVGVNKMD 582
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 56.0 bits (129), Expect = 3e-08
Identities = 47/148 (31%), Positives = 65/148 (43%)
Frame = +1
Query: 139 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 318
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 319 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 498
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 499 KNGQTREHALLAFTLGVKQLIVGVNKMD 582
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.0 bits (129), Expect = 3e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +1
Query: 139 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 318
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 319 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 477
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 44.8 bits (101), Expect(2) = 7e-06
Identities = 43/128 (33%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Frame = +1
Query: 262 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 438
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 439 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLR 618
AD VL+VAA G E QT + A V QL+V VNK+D P ++P +R
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKIDK---PNADP-MR 275
Query: 619 KSRRKYPH 642
R H
Sbjct: 276 AMRSLLEH 283
Score = 23.0 bits (47), Expect(2) = 7e-06
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 142 IVVIGHVDSGKST 180
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 45.2 bits (102), Expect = 6e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 115 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 267
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 268 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 435
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 436 QADCAVLIVAAGTG 477
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 44.8 bits (101), Expect = 8e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 115 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 267
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 268 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 435
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 436 QADCAVLIVAAGTG 477
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.3 bits (95), Expect = 5e-04
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 1/166 (0%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 315
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 316 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 492
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 493 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRLRKSRR 630
I QT EH LLA ++I+ +NK D E +K R+
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAEKSKISESAKKVRK 152
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 38.7 bits (86), Expect = 0.006
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +1
Query: 121 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 297
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 298 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 462
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 38.7 bits (86), Expect = 0.006
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +1
Query: 121 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 297
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 298 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 462
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 34.3 bits (75), Expect = 0.12
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +1
Query: 139 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 318
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 319 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 477
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 34.3 bits (75), Expect = 0.12
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +1
Query: 139 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 318
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 319 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 477
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.16
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 370 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 549
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 550 KQLIVGVNKMD 582
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 33.5 bits (73), Expect = 0.21
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 309
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 310 ERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 471
RG ++ A E S VT+ID G + K I G + A L+VAA
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACLVVAA- 284
Query: 472 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 582
+ GI+ TREH L L + ++ + KMD
Sbjct: 285 ----DRGIT--WATREHLGLIAALNIPMFVL-ITKMD 314
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 575 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 447
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.3 bits (70), Expect = 0.48
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +1
Query: 379 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 558
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 559 IVGVNKMDSTEPPYSEPR 612
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 217 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 318
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 217 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 318
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 49 LHSCLESISDITRSL*SXD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDK 222
L+ E+++++ R PK +EK I + +V+ G TTG +CGG ++
Sbjct: 1279 LNHANETMAELKRKFNEFKRPKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEV 1338
Query: 223 RTIEKFEKEAQEMGK 267
R + + AQE K
Sbjct: 1339 RALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 49 LHSCLESISDITRSL*SXD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDK 222
L+ E+++++ R PK +EK I + +V+ G TTG +CGG ++
Sbjct: 1279 LNHANETMAELKRKFNEFKRPKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEV 1338
Query: 223 RTIEKFEKEAQEMGK 267
R + + AQE K
Sbjct: 1339 RALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 49 LHSCLESISDITRSL*SXD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDK 222
L+ E+++++ R PK +EK I + +V+ G TTG +CGG ++
Sbjct: 1279 LNHANETMAELKRKFNEFKRPKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEV 1338
Query: 223 RTIEKFEKEAQEMGK 267
R + + AQE K
Sbjct: 1339 RALVRMLDGAQEKWK 1353
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 136 INIVVIGHVDSGKSTTT 186
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -1
Query: 558 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 400
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 399 VSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSI 280
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,089,238
Number of Sequences: 27780
Number of extensions: 420323
Number of successful extensions: 1209
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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