Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B24
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    32   0.099
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    27   4.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.5  

>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 412 FFEYENRRGKNISDVEKSSXKVTELSFEEAFELTGHGRSNHLVSSRAADHAER 570
           +F+Y N +G N   + KS+ +  E   E  F + G G   HL+        +R
Sbjct: 168 YFQYANFKGWNCKFISKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVHRVQR 220


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -3

Query: 534 MVGPAMAS*LKSFLERQ----FGYLXRAFFYIRNVLSSSVFIFEEVRTLNGFF 388
           M+GP + S L     R+    FGY   A   I   LS ++ +F   R  +GFF
Sbjct: 89  MLGPLIFSPLSELYGRRPLNIFGYTLFALMQIPTALSVNLAMFVVFRFFSGFF 141


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 530 LDLPWPVNSKASSNDSSVTXSELFSTSEMFF 438
           +DLP P+NS   S+D SV    +   S++FF
Sbjct: 398 VDLPGPINSYTISSDRSVV--AILVNSQIFF 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,951
Number of Sequences: 5004
Number of extensions: 47981
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)