Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B24
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0704 + 6219530-6219609,6221595-6222243,6222339-6222437,622...    28   9.0  
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161...    28   9.0  
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804...    28   9.0  

>08_01_0704 +
           6219530-6219609,6221595-6222243,6222339-6222437,
           6222521-6222616,6222750-6222848,6222929-6223027,
           6223811-6223882,6224508-6224597,6225173-6227329
          Length = 1146

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 559 DQPLVKRPDGWTCHGQLTQ 503
           D+P++K PDGW   G LT+
Sbjct: 281 DKPVMKGPDGWWKEGMLTK 299


>05_07_0167 +
           28115290-28115349,28115952-28115996,28116087-28116179,
           28116259-28116342,28116949-28117131,28117234-28117276,
           28117671-28117891,28118060-28118137,28118404-28118529,
           28118616-28118825
          Length = 380

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 902 FXGLFPQGXKXPXPXXPERKNPXGXXPXESAS 807
           +  ++P G   P P  P   NP    P +SAS
Sbjct: 77  YAAMYPHGGAYPHPLMPMMANPLSMEPAKSAS 108


>04_04_1111 -
           30979334-30979479,30979769-30979866,30980364-30980443,
           30980685-30980756,30980860-30980901,30981009-30981170,
           30981276-30981427,30981453-30981538,30981654-30981726,
           30982706-30982889
          Length = 364

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 445 ISDVEKSSXKVTELSFEEAFELTGHGRSNHLVSSRAADHAER 570
           + +  K   KVTE     A     HG S   +  R ++HAER
Sbjct: 248 VDEASKRLVKVTEECMLRAISACKHGTSLKKIGRRISEHAER 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,076,760
Number of Sequences: 37544
Number of extensions: 289820
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)