Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B23
         (1001 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.61 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.61
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = +1

Query: 814 RPGXAPPGPXPXP---PRXPXXXLPXPXXXRAPPP 909
           +P    PGP P P   P+ P    P P   + PPP
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSP-PNPSQGPPP 48



 Score = 25.4 bits (53), Expect = 0.81
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 448 PXXXGAPGXXXGXXPPXPXRGPPXPRPXGXXP 543
           P    +P       PP P +GPP   P G  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
 Frame = +1

Query: 460 GAPGXXXGXX--PPXPXRG-PPXPR---PXGXXPGPP 552
           GAPG        P  P RG PP P    P G  PG P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 970 PXPXPPPPP 996
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.152    0.558 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,809
Number of Sequences: 438
Number of extensions: 4920
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)