Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B21
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   3.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
 Frame = +3

Query: 543 KKXPPPXGXXPPXGGXALFFXKXXXGGXPPXXXXXPPPPPQXX--GXXXXXPXGGXXPXP 716
           KK PPP    PP              G        PPPPP+    G     P G   P P
Sbjct: 308 KKRPPP----PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363

Query: 717 PXP 725
           P P
Sbjct: 364 PPP 366


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
 Frame = +1

Query: 574  PXXGGXPXFXKKXXGGXXPPXXXXXPP-PPPKXGGAXXXXPXGGXPPXPXP 723
            P   G P   K        P     PP P P         P  G PP P P
Sbjct: 1134 PVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 17/61 (27%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
 Frame = +1

Query: 550  PPPXXGXXPXX---GGXPXFXKKXXGGXXPPXXXXXPPPPPKXGGAXXXXPXGGXPPXPX 720
            P P  G  P      G P           P      PP PP         P  G PP P 
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPV 1231

Query: 721  P 723
            P
Sbjct: 1232 P 1232



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/53 (30%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
 Frame = +1

Query: 574  PXXGGXPXFXKKXXGGXXPPXXXXXPPPPPKXGGAXXXX-PXGGXPPXPXPXG 729
            P   G P   K        P      PP P   GA     P    PP P P G
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +1

Query: 574  PXXGGXPXFXKKXXGGXXPPXXXXXPPPPPKXGGAXXXXPXGGXPPXPXP 723
            P   G P   K        P     PP P     A       G PP P P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +1

Query: 631  PXXXXXPPPPPKXGGAXXXXPXGGXPPXPXP 723
            P     P P P  G      P  G PP P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
 Frame = +1

Query: 550  PPPXXGXXPXX--GGXPXFXKKXXG-GXXPPXXXXXPPPPPKXGGAXXXXPXGGXPPXPX 720
            P P  G  P       P   K   G    PP     P P P  G      P    PP P 
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPA 1241

Query: 721  P 723
            P
Sbjct: 1242 P 1242


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +3

Query: 21  HYREFLKDSVEELPSC----TTCPTICDNFNNFCXS 116
           ++R  L D VEEL SC     +C  I D  NN+  S
Sbjct: 433 YHRRALNDLVEELGSCPRSSDSCRAILDILNNYIFS 468


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 628 PPXXXXXPPPPPKXGGAXXXXPXGGXPPXP 717
           P      PPPPP   G     P    PP P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 631 PXXXXXPPPPPKXGGAXXXXPXGGXPPXPXP 723
           P     PPPPP  G A    P    PP P P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPP---PPPPPPP 783



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +3

Query: 627 PPXXXXXPPPPPQXXGXXXXXPXGGXXPXPPXPGXFFXGG 746
           P      PPPPP   G        G  P PP P     GG
Sbjct: 754 PAPIMGGPPPPPPPPG----VAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,109
Number of Sequences: 5004
Number of extensions: 38306
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)