Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B19
         (906 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0239 - 10801978-10802111,10803127-10803291,10803374-10803518     38   0.011
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083...    38   0.015
08_01_0812 + 7886057-7886872,7887115-7887702                           32   0.55 
07_03_0394 - 17633753-17636788                                         29   5.1  
03_02_0819 + 11511347-11511562,11511631-11511771                       29   6.7  
07_01_0236 - 1725061-1727070                                           28   8.9  

>05_03_0239 - 10801978-10802111,10803127-10803291,10803374-10803518
          Length = 147

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 275 LTKYCNESTRIAIIRVRHGPHRFVTSSLPFVKTIGKLNVRLNTLHVGATLK 427
           + KY N  T++ +IRV    H+ V +++  V++IGK+ V  N   V  +++
Sbjct: 57  IVKYVNPITKLCVIRVSREDHQKVWAAITMVRSIGKIPVSFNLRDVSGSIR 107


>04_03_0229 -
           13006869-13007017,13007925-13008089,13008178-13008332,
           13010276-13011021
          Length = 404

 Score = 37.5 bits (83), Expect = 0.015
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
 Frame = +2

Query: 128 RYITVEIVC--PTVSEKTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGF--------- 274
           RY+ +E+    P   +  PL L        +   +Q   G+ G+AA              
Sbjct: 249 RYMVMEVFIDTPVKGQPDPLILTQINITKAIKDSIQLNFGECGLAACLGSLQGVYELCSS 308

Query: 275 LTKYCNESTRIAIIRVRHGPHRFVTSSLPFVKTIGKLNVRLNTLHVGATLK 427
             KY N  T++ +IRV    H+ V +++  V+ IGK+ V  N   +  +++
Sbjct: 309 AVKYVNPITKLCVIRVSREDHQKVWAAITMVRNIGKIPVSFNLRDMSGSIR 359


>08_01_0812 + 7886057-7886872,7887115-7887702
          Length = 467

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 437 KFIQKFQRAYLDARWVKLKTPEERQQLEQAVLDFTKTDVKINIE 568
           +F  +FQR Y + ++ K+  P+ RQ+L QA++    T   + +E
Sbjct: 395 RFESEFQRTYTNHKFWKVPNPDLRQRLRQAIVQKVVTHYSMYLE 438


>07_03_0394 - 17633753-17636788
          Length = 1011

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 368 KTIGKLNVRLNTLHVGATLKHTFKFI 445
           K IGK+ +RL+TL  G    HT+  +
Sbjct: 687 KPIGKVRIRLSTLETGRVYTHTYPLL 712


>03_02_0819 + 11511347-11511562,11511631-11511771
          Length = 118

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 234 ICCTL---CNTVL*KIPGFNCNGVFSETVGHTISTVIY-LPIFKTNHYLNLKQ 88
           IC T+   CN +     G NCNG   +T   T S  +Y  PI   N+ +N+++
Sbjct: 56  ICPTIWADCNMLTSSTAGQNCNGQLDKTAA-TFSEAMYENPIMAFNYTINMER 107


>07_01_0236 - 1725061-1727070
          Length = 669

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 197 IFHSTVLHKVQQIHGDFGVAAIKSGFLTKYCNESTRIAIIRVRHGPHRFVTSSLPFVKTI 376
           +FH+T   K + + G  G   +  G LTK     + +A+ RV H   + +   +  V +I
Sbjct: 345 LFHATEGFKDKHLLGIGGFGRVYKGVLTK---SKSEVAVKRVSHESRQGMREFIAEVVSI 401

Query: 377 GKL 385
           G+L
Sbjct: 402 GRL 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,483,797
Number of Sequences: 37544
Number of extensions: 295518
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)