Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP06_F_B19
         (906 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012505-1|AAH12505.1|  163|Homo sapiens processing of precursor...    67   7e-11
AJ306296-1|CAC59822.1|  163|Homo sapiens Pop5 protein protein.         67   7e-11
AK223206-1|BAD96926.1|  163|Homo sapiens processing of precursor...    62   3e-09
AF117232-1|AAF17213.1|  162|Homo sapiens protein x 0003 protein.       61   6e-09

>BC012505-1|AAH12505.1|  163|Homo sapiens processing of precursor 5,
           ribonuclease P/MRP subunit (S. cerevisiae) protein.
          Length = 163

 Score = 67.3 bits (157), Expect = 7e-11
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
 Frame = +2

Query: 146 IVCPTVSE--KTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYCNESTRIAIIR 319
           ++C  VS+  +  L L   +  S V   + ++HG FG AA   GF  +Y N  T I ++R
Sbjct: 9   LLCELVSDDPRCRLSLDDRVLSSLVRDTIARVHGTFGAAACSIGFAVRYLNAYTGIVLLR 68

Query: 320 VRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQRAYLDARWVK 487
            R   ++ V S+LPF+  +     R     NTLHVG T++   KF+ ++ R  L      
Sbjct: 69  CRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYNRRQLLILLQN 128

Query: 488 LKTPEERQQLEQAV 529
                ER+ ++++V
Sbjct: 129 CTDEGEREAIQKSV 142


>AJ306296-1|CAC59822.1|  163|Homo sapiens Pop5 protein protein.
          Length = 163

 Score = 67.3 bits (157), Expect = 7e-11
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
 Frame = +2

Query: 146 IVCPTVSE--KTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYCNESTRIAIIR 319
           ++C  VS+  +  L L   +  S V   + ++HG FG AA   GF  +Y N  T I ++R
Sbjct: 9   LLCELVSDDPRCRLSLDDRVLSSLVRDTIARVHGTFGAAACSIGFAVRYLNAYTGIVLLR 68

Query: 320 VRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQRAYLDARWVK 487
            R   ++ V S+LPF+  +     R     NTLHVG T++   KF+ ++ R  L      
Sbjct: 69  CRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYNRRQLLILLQN 128

Query: 488 LKTPEERQQLEQAV 529
                ER+ ++++V
Sbjct: 129 CTDEGEREAIQKSV 142


>AK223206-1|BAD96926.1|  163|Homo sapiens processing of precursor 5,
           ribonuclease P/MRP subunit isoform a variant protein.
          Length = 163

 Score = 62.1 bits (144), Expect = 3e-09
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
 Frame = +2

Query: 146 IVCPTVSE--KTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYCNESTRIAIIR 319
           ++C  VS+  +  L L   +  S V   + ++HG FG AA   GF  +Y N  T I ++R
Sbjct: 9   LLCELVSDDPRCRLSLDDRVLSSLVRDTIARVHGTFGAAACSIGFAVRYLNAYTGIVLLR 68

Query: 320 VRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQRAYLDARWVK 487
            R   ++ V S+LPF+  +     R     +TL VG T++   KF+ ++ R  L      
Sbjct: 69  CRKEFYQLVWSALPFITYLENKGHRYPCFFDTLRVGGTIRTCQKFLIQYNRRQLLILLQN 128

Query: 488 LKTPEERQQLEQAV 529
                ER+ ++++V
Sbjct: 129 CTDEGEREAIQKSV 142


>AF117232-1|AAF17213.1|  162|Homo sapiens protein x 0003 protein.
          Length = 162

 Score = 60.9 bits (141), Expect = 6e-09
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
 Frame = +2

Query: 146 IVCPTVSE--KTPLQLKPGIFHSTVLHKVQQIHGDFGVAAIKSGFLTKYCNESTRIAIIR 319
           ++C  VS+  +  L L   +  S V   + ++HG FG A    GF  +Y N  T I ++R
Sbjct: 9   LLCELVSDDPRCRLSLDDRVLSSLVRDTIARVHGTFG-APCSIGFAVRYLNAYTGIVLLR 67

Query: 320 VRHGPHRFVTSSLPFVKTIGKLNVR----LNTLHVGATLKHTFKFIQKFQRAYLDARWVK 487
            R   ++ V S+LPF+  +     R     NTLHVG T++   KF+ ++ R  L      
Sbjct: 68  CRKEFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQKFLIQYNRRQLLILLQN 127

Query: 488 LKTPEERQQLEQAV 529
                ER+ ++++V
Sbjct: 128 CTDEGEREAIQKSV 141


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,726,552
Number of Sequences: 237096
Number of extensions: 1816686
Number of successful extensions: 2879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2876
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)